Evidence map›Paper›PMID 40579721›Full record

ArticleGenome biology and evolution2025

Harboring Starships: The Accumulation of Large Horizontal Gene Transfers in Domesticated and Pathogenic Fungi.

Samuel O'Donnell, Gabriela Rezende, Jean-Philippe Vernadet, Alodie Snirc, Jeanne Ropars

Abstract read
In one paragraph

Article in Genome biology and evolution, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Proceedings of the National Academy of Sciences of the United States of America · 2026
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  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Samuel O'DonnellCNRS, AgroParisTech, Ecologie Société et Evolution, Universite Paris-Saclay, Gif-sur-Yvette 91190, France.ORCID 0000-0003-2447-1993
Gabriela RezendeCNRS, AgroParisTech, Ecologie Société et Evolution, Universite Paris-Saclay, Gif-sur-Yvette 91190, France.ORCID 0000-0003-1416-2046
Jean-Philippe VernadetCNRS, AgroParisTech, Ecologie Société et Evolution, Universite Paris-Saclay, Gif-sur-Yvette 91190, France.ORCID 0009-0007-5104-5857
Alodie SnircCNRS, AgroParisTech, Ecologie Société et Evolution, Universite Paris-Saclay, Gif-sur-Yvette 91190, France.ORCID 0009-0003-2121-0197
Jeanne RoparsCNRS, AgroParisTech, Ecologie Société et Evolution, Universite Paris-Saclay, Gif-sur-Yvette 91190, France.ORCID 0000-0002-3740-9673

Funding

Artifice ANR-19-CE20-0006 to 0001CNIEL
6 · The paper itself

Abstract

Human-related environments, including food and clinical settings, present microorganisms with atypical and challenging conditions that necessitate adaptation. Several cases of novel horizontally acquired genetic material associated with adaptive traits have been recently described, contained within giant transposons named Starships. While a handful of Starships have been identified in domesticated species, their abundance has not yet been systematically explored in human-associated fungi. Here, we investigated whether Starships have shaped the genomes of two major genera of fungi occurring in food and clinical environments, Aspergillus and Penicillium, providing a unique opportunity to study several independent events of adaptation to similar niches. We found in all cases that the domesticated strains or species exhibited significantly greater Starship content compared with close relatives from nonhuman-related environments, containing an enrichment in genes involved in adaptation to food. We found a similar pattern in clinical contexts. Our findings have clear implications for agriculture, human health and the food industry as we implicate Starships as a widely recurrent mechanism of gene transfer aiding the rapid adaptation of fungi to novel environments.

Indexed as

AspergillusDNA Transposable ElementsGene Transfer, HorizontalPenicilliumEvolution, MolecularFungiGenome, FungalHumansPhylogenyDNA Transposable Elementsadaptationclinicalfermented foodfilamentous fungihorizontal gene transfertransposable elements

Identifiers

PMID40579721
PMCPMC12256816

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.