Evidence map›Paper›PMID 40578347›Full record

ArticleMolecular cell2025

The DNA replication checkpoint limits Okazaki fragment accumulation to protect and restart stalled forks.

Berta Canal, Agostina P Bertolin, Giselle C Lee, Lucy S Drury, Masashi Minamino, John F X Diffley

Abstract read
In one paragraph

Article in Molecular cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
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  6. Article
  7. mSphere · 2026
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Ubiquitin and SUMO pathways in DNA replication and replication-coupled repair.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Berta CanalChromosome Replication Laboratory, The Francis Crick Institute, London NW1 1AT, UK.
Agostina P BertolinChromosome Replication Laboratory, The Francis Crick Institute, London NW1 1AT, UK.
Giselle C LeeChromosome Replication Laboratory, The Francis Crick Institute, London NW1 1AT, UK.
Lucy S DruryChromosome Replication Laboratory, The Francis Crick Institute, London NW1 1AT, UK.
Masashi MinaminoChromosome Segregation Laboratory, The Francis Crick Institute, London NW1 1AT, UK.
John F X DiffleyChromosome Replication Laboratory, The Francis Crick Institute, London NW1 1AT, UK. Electronic address: john.diffley@crick.ac.uk.

Funding

Wellcome Trust FC001066
6 · The paper itself

Abstract

Understanding how DNA replication forks stall and restart and how the DNA replication checkpoint prevents irreversible fork collapse in molecular detail are crucial for understanding how cells maintain stable genomes and how they prevent the genetic instability that drives cancer. Here, we describe the reconstitution of fork stalling and restart with purified budding yeast proteins. After nucleotide depletion, leading-strand DNA synthesis quickly stops but CMG helicase continues to unwind, and Okazaki fragments continue to initiate on the lagging strand. Incomplete Okazaki fragments sequester PCNA, RFC, and DNA polymerases δ and ε, which prevents normal DNA synthesis restart and exposes nascent DNA to nuclease attack. The DNA replication checkpoint restrains fork progression, which limits this sequestration, protecting stalled forks from collapse and ensuring restart.

Indexed as

DNADNA, FungalDNA ReplicationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDNA HelicasesDNA Polymerase IIDNA Polymerase IIIGenomic InstabilityProliferating Cell Nuclear AntigenReplication Protein CDNADNA, FungalDNA HelicasesDNA Polymerase IIDNA Polymerase IIIOkazaki fragmentsProliferating Cell Nuclear AntigenReplication Protein CSaccharomyces cerevisiae ProteinsDNA polymerase αDNA polymerase δDNA polymerase εDNA replication checkpointDNA replication fork stabilizationOkazaki fragmentsPCNAreplication fork collapseRFCRPA exhaustion

Identifiers

PMID40578347
PMCPMC7619431

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.