Evidence map›Paper›PMID 40577485›Full record

ArticlePLoS genetics2025

The transcription factors Tfeb and Tfe3 are required for survival and embryonic development of pancreas and liver in zebrafish.

Alberto Rissone, Martina La Spina, Erica Bresciani, Zulfeqhar A Syed, Christian A Combs, Martha Kirby, Abdel Elkahloun, Vicky Chen, Raman Sood, Shawn M Burgess and 1 more

Abstract read
In one paragraph

Article in PLoS genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alberto RissoneCell and Developmental Biology Center, NHLBI, NIH, Bethesda, Maryland, United States of America.ORCID https://orcid.org/0000-0003-0732-7316
Martina La SpinaCell and Developmental Biology Center, NHLBI, NIH, Bethesda, Maryland, United States of America.
Erica BrescianiOncogenesis and Development Section, NHGRI, NIH, Bethesda, Maryland, United States of America.ORCID https://orcid.org/0009-0001-5687-6365
Zulfeqhar A SyedElectron Microscopy Core Facility, NHLBI, NIH, Bethesda, Maryland, United States of America.ORCID https://orcid.org/0000-0002-5825-9782
Christian A CombsLight Microscopy Core, NHLBI, NIH, Bethesda, Maryland, United States of America.
Martha KirbyFlow Cytometry Core Facility, NHGRI, NIH, Bethesda, Maryland, United States of America.
Abdel ElkahlounMicroarray and Single-cell Genomics Core, NHGRI, NIH, Bethesda, Maryland, United States of America.
Vicky ChenIntegrated Data Science Services, Research Technologies Branch, NIAID, NIH, Bethesda, Maryland, United States of America.
Raman SoodZebrafish Core, NHGRI, NIH, Bethesda, Maryland, United States of America.ORCID https://orcid.org/0000-0001-5565-662X
Shawn M BurgessTranslational and Functional Genomics Branch, NHGRI, NIH, Bethesda, Maryland, United States of America.ORCID https://orcid.org/0000-0003-1147-0596
Rosa PuertollanoCell and Developmental Biology Center, NHLBI, NIH, Bethesda, Maryland, United States of America.ORCID https://orcid.org/0000-0002-1106-5489

Funding

Role of endolysosomal channels in calcium homeostasis and traffickingZIAHL006075 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI PUERTOLLANO, ROSA · 2010 to 2025
$8.7M
Intramural NIH HHS ZIA HL006075
6 · The paper itself

Abstract

The transcription factors TFEB and TFE3 modulate expression of lysosomal, autophagic, and metabolic genes to restore energy and cellular homeostasis in response to a variety of stress conditions. Since their role during vertebrate development is less characterized, we used CRISPR/Cas9 to deplete tfeb, tfe3a, and tfe3b in zebrafish. The simultaneous lack of these genes compromised embryo survival during early development, with an almost complete lethality of the larvae by 8-10 dpf. The knockout animals showed apoptosis in brain and retina and alterations in pancreas, liver, and gut. Exocrine pancreas presented the most severe defects, with accumulation of abnormal zymogen granules leading to acinar atrophy in embryos and pancreatitis-like phenotypes in adults; likely due to a block of the autophagy machinery implicated in removal of damaged granules. Knockout animals displayed increased susceptibility to oxidative and heat-shock stress. Our work reveals an essential role of Tfeb and Tfe3 in maintaining cellular and tissue homeostasis during development.

Indexed as

Basic Helix-Loop-Helix Leucine Zipper Transcription FactorsEmbryonic DevelopmentLiverPancreasZebrafishZebrafish ProteinsAnimalsApoptosisAutophagyCRISPR-Cas SystemsGene Expression Regulation, DevelopmentalOxidative StressBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsZebrafish Proteins

Identifiers

PMID40577485
PMCPMC12225984

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.