Evidence map›Paper›PMID 40576561›Full record

ArticleThe Journal of cell biology2025

A substrate-interacting region of Parkin directs ubiquitination of the mitochondrial GTPase Miro1.

Joanna Koszela, Anne Rintala-Dempsey, Giulia Salzano, Viveka Pimenta, Outi Kamarainen, Mads Gabrielsen, Aasna L Parui, Gary S Shaw, Helen Walden

Abstract read
In one paragraph

Article in The Journal of cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. PAX-Interacting Protein 1 (PTIP) Promotes Apoptosis.Journal of cellular signaling · 2025
    Article
  7. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Joanna KoszelaSchool of Molecular Biosciences, University of Glasgow , Glasgow, UK.ORCID 0000-0002-8606-5379
Anne Rintala-DempseyDepartment of Biochemistry, The University of Western Ontario, London, Canada.ORCID 0009-0004-2698-798X
Giulia SalzanoHuman Technopole , Milan, Italy.ORCID 0000-0001-9770-794X
Viveka PimentaDepartment of Biochemistry, The University of Western Ontario, London, Canada.ORCID 0009-0002-7599-935X
Outi KamarainenSchool of Molecular Biosciences, University of Glasgow , Glasgow, UK.ORCID 0000-0003-3248-4778
Mads GabrielsenThe Neil Bulleid Integrated Protein Analysis Facility, Shared Research Facilities, University of Glasgow, Glasgow, UK.ORCID 0000-0002-9848-2276
Aasna L ParuiSchool of Molecular Biosciences, University of Glasgow , Glasgow, UK.ORCID 0000-0001-7038-6875
Gary S ShawDepartment of Biochemistry, The University of Western Ontario, London, Canada.ORCID 0000-0002-4685-9625
Helen WaldenSchool of Molecular Biosciences, University of Glasgow , Glasgow, UK.ORCID 0000-0002-4289-4810

Funding

CIHR PJT 166019Wellcome TrustWellcome Trust 209347/Z/17/Z
6 · The paper itself

Abstract

Mutations in the E3 ubiquitin ligase Parkin gene have been linked to early onset Parkinson's disease. Besides many other roles, Parkin is involved in clearance of damaged mitochondria via mitophagy-a process of particular importance in dopaminergic neurons. Upon mitochondrial damage, Parkin accumulates at the outer mitochondrial membrane and is activated, leading to ubiquitination of many mitochondrial substrates and recruitment of mitophagy effectors. While the activation mechanisms of autoinhibited Parkin have been extensively studied, it remains unknown how Parkin recognizes its substrates for ubiquitination. Here, we characterize a conserved region in the flexible linker between the Ubl and RING0 domains of Parkin, which is indispensable for Parkin interaction with the mitochondrial GTPase Miro1. Our results may explain fast kinetics of Miro1 ubiquitination by Parkin in recombinant assays and provide a biochemical explanation for Miro1-dependent Parkin recruitment to the mitochondrial membrane observed in cells. Our findings are important for understanding mitochondrial homeostasis and may inspire new therapeutic avenues for Parkinson's disease.

Indexed as

MitochondriaMitochondrial Proteinsrho GTP-Binding ProteinsUbiquitinationUbiquitin-Protein LigasesAnimalsHEK293 CellsHeLa CellsHumansMitochondrial MembranesMitophagyParkinson DiseaseProtein BindingMitochondrial Proteinsparkin proteinrho GTP-Binding ProteinsRHOT1 protein, humanUbiquitin-Protein Ligases

Identifiers

PMID40576561
PMCPMC12203984

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.