Evidence map›Paper›PMID 40576316›Full record

ArticleMicrobiology resource announcements2025

Sediment and groundwater metagenomes from subsurface microbial communities from the Oak Ridge National Laboratory Oak Ridge Reservation, Oak Ridge, Tennessee, USA.

Lauren M Lui, Torben N Nielsen, Heidi J Smith, John-Marc Chandonia, Jennifer V Kuehl, Fangchao Song, Andrew Sczesnak, Andrew Hendrickson, Terry C Hazen, Matthew W Fields and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology resource announcements, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lauren M LuiEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0001-8720-5268
Torben N NielsenEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-0987-7189
Heidi J SmithCenter for Biofilm Engineering, Montana State University, Bozeman, Montana, USA.ORCID 0000-0001-7234-9146
John-Marc ChandoniaEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-5153-9079
Jennifer V KuehlEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0003-2813-2518
Fangchao SongEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-9427-9879
Andrew SczesnakDepartment of Bioengineering, University of California, Berkeley, California, USA.ORCID 0000-0002-0152-9745
Andrew HendricksonEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Terry C HazenOak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0002-2536-9993
Matthew W FieldsCenter for Biofilm Engineering, Montana State University, Bozeman, Montana, USA.ORCID 0000-0001-9053-1849
Adam P ArkinEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-4999-2931

Funding

U.S. Department of Energy DE-AC02-05CH11231
6 · The paper itself

Abstract

We report 26 subsurface sediment and 9 groundwater metagenomes from the Oak Ridge Reservation at Oak Ridge, TN, USA. Samples were collected from various depths and phases (attached vs planktonic) to study subsurface microbial metabolism, the effect of contamination on microbial communities, and differences across groundwater and sediment microbial communities.

Indexed as

groundwatermetagenomicssedimentsubsurface

Identifiers

PMID40576316
PMCPMC12352057

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.