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ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2025

Spatiotemporal Transcriptomic Atlas Reveals the Regulatory Mechanisms Underlying Early Inflorescence Development and Sex Differentiation in Spinach.

Chen You, Hao Yang, Yueyan Zhao, Xiaoning Wang, Shuaijie Wei, Ning Chen, Yulan Zhang, Luxian Liu, Wei Qian, Shufen Li and 1 more

Abstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Chen YouCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
Hao YangCollege of Life Sciences, Henan Agricultural University, Zhengzhou, 450002, China.
Yueyan ZhaoCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
Xiaoning WangCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
Shuaijie WeiCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
Ning ChenCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
Yulan ZhangCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
Luxian LiuCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
Wei QianState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Shufen LiCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
Wujun GaoCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China.ORCID https://orcid.org/0000-0001-8160-7776

Funding

National Natural Science Foundation of China 31800260National Natural Science Foundation of China 31970240National Natural Science Foundation of China 32170336Natural Science Foundation of Henan Province 252300421281Science and Technology Innovation Talents in Universities of Henan Province 23HASTIT035
6 · The paper itself

Abstract

Dioecious plant species produce male and female flowers on separate individuals. However, the molecular regulatory mechanisms underlying these processes remain poorly understood. In this study, the model dioecious spinach (Spinacia oleracea), a widely cultivated leafy vegetable, is investigated by analyzing spatial transcriptomes of the shoot apices at different developmental stages. The findings elucidate key regulatory pathways underlying both inflorescence development and sex differentiation. Through the characterization of dynamic transcriptional changes across four consecutive developmental phases, distinct cell types within the shoot apex and stage-specific marker genes are identified. Notably, pseudotime trajectory analysis reveals that spinach sex differentiation occurs at the four-leaf stage. Furthermore, the critical involvement of epigenetic mechanisms in this process is demonstrated. By integrating functional genetic validation, the epigenetic regulator MULTICOPY SUPPRESSOR OF IRA 1 (MSI1) together with histone deacetylase HDT2 is discovered to promote female differentiation. Collectively, this work provides comprehensive insights into the regulatory networks controlling inflorescence development and sexual differentiation in spinach and establishes a valuable resource for advancing sex differentiation research in dioecious plants.

Indexed as

InflorescenceSex DifferentiationSpinacia oleraceaTranscriptomeGene Expression ProfilingGene Expression Regulation, PlantPlant ProteinsPlant Proteinsdioecious plantepigeneticsinflorescence developmentMSI1sex differentiationspatial transcriptomicsspinach

Identifiers

PMID40574481
PMCPMC12462940

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.