Evidence map›Paper›PMID 40571767›Full record

ArticleExperimental & molecular medicine2025

Changes in mitochondrial thymidine metabolism and mtDNA copy number during induced pluripotency.

Hyun Kyu Kim, Yena Song, Minji Kye, Byeongho Yu, Hyung Kyu Choi, Sung-Hwan Moon, Man Ryul Lee

Erratum issuedAbstract read
In one paragraph

Article in Experimental & molecular medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Hyun Kyu KimSoonchunhyang Institute of Medi-bio Science, Soon Chun Hyang University, Cheonan, Republic of Korea.
Yena SongSoonchunhyang Institute of Medi-bio Science, Soon Chun Hyang University, Cheonan, Republic of Korea.
Minji KyeSoonchunhyang Institute of Medi-bio Science, Soon Chun Hyang University, Cheonan, Republic of Korea.
Byeongho YuSoonchunhyang Institute of Medi-bio Science, Soon Chun Hyang University, Cheonan, Republic of Korea.
Hyung Kyu ChoiDepartment of Animal Science and Technology, Chung-Ang University, Anseong, Republic of Korea.
Sung-Hwan MoonDepartment of Animal Science and Technology, Chung-Ang University, Anseong, Republic of Korea.
Man Ryul LeeDepartment of Stem Cell and Regenerative Biotechnology, KU Institute of Science and Technology, The Institute of Advanced Regenerative Science, Konkuk University, Gwangjin-gu, Republic of Korea. stemopia@konkuk.ac.kr.ORCID http://orcid.org/0000-0002-2351-9679

Funding

National Research Foundation of Korea (NRF) 2020R16A3A13077021, RS-2023-00220207
6 · The paper itself

Abstract

Somatic cell reprogramming into human induced pluripotent stem cells entails significant intracellular changes, including modifications in mitochondrial metabolism and a decrease in mitochondrial DNA copy number. However, the mechanisms underlying this decrease in mitochondrial DNA copy number during reprogramming remain unclear. Here we aimed to elucidate these underlying mechanisms. Through a meta-analysis of several RNA sequencing datasets, we identified genes responsible for the decrease in mitochondrial DNA. We investigated the functions of these identified genes and assessed their regulatory mechanisms. In particular, the expression of the thymidine kinase 2 gene (TK2), located in the mitochondria and required for mitochondrial DNA synthesis, is decreased in human pluripotent stem cells as compared with its expression in somatic cells. TK2 was significantly downregulated during reprogramming and markedly upregulated during differentiation. Collectively, this decrease in TK2 levels induces a decrease in mitochondrial DNA copy number and contributes to shaping the metabolic characteristics of human pluripotent stem cells. However, contrary to our expectations, treatment with a TK2 inhibitor impaired somatic cell reprogramming. These results suggest that decreased TK2 expression may result from metabolic conversion during somatic cell reprogramming.

Indexed as

DNA Copy Number VariationsDNA, MitochondrialInduced Pluripotent Stem CellsMitochondriaThymidineCell DifferentiationCellular ReprogrammingHumansThymidine KinaseDNA, MitochondrialThymidineThymidine Kinasethymidine kinase 2

Identifiers

PMID40571767
PMCPMC12229447

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.