Evidence map›Paper›PMID 40571713›Full record

ArticleNature communications2025

Uncovering minimal pathways in melanoma initiation.

Hui Xiao, Jessica Shiu, Chi-Fen Chen, Jie Wu, Peijie Zhou, Sahil S Telang, Rolando Ruiz-Vega, Robert A Edwards, Qing Nie, Arthur D Lander and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Hui XiaoCenter for Complex Biological Systems, University of California, Irvine, USA.ORCID http://orcid.org/0000-0002-4844-2073
Jessica ShiuDepartment of Dermatology, University of California, Irvine, USA.
Chi-Fen ChenDepartment of Dermatology, University of California, Irvine, USA.ORCID http://orcid.org/0000-0002-6391-821X
Jie WuDepartment of Biological Chemistry, University of California, Irvine, USA.ORCID http://orcid.org/0000-0003-2759-5879
Peijie ZhouDepartment of Mathematics, University of California, Irvine, USA.ORCID http://orcid.org/0000-0002-4585-2923
Sahil S TelangDepartment of Dermatology, University of California, Irvine, USA.
Rolando Ruiz-VegaCenter for Complex Biological Systems, University of California, Irvine, USA.
Robert A EdwardsDepartment of Pathology, University of California, Irvine, USA.ORCID http://orcid.org/0000-0001-9145-382X
Qing NieDepartment of Mathematics, University of California, Irvine, USA.ORCID http://orcid.org/0000-0002-8804-3368
Arthur D LanderCenter for Complex Biological Systems, University of California, Irvine, USA.ORCID http://orcid.org/0000-0002-4380-5525
Anand K GanesanDepartment of Dermatology, University of California, Irvine, USA. aganesan@uci.edu.ORCID http://orcid.org/0000-0003-4944-9274

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Melanie Funes · 1994 to 2026
$57.9M
Shared Resource Core: Single Cell AnalysisU54CA217378 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D · 2018 to 2022
$9.7M
Understanding critical transitions in chronic myeloid leukemia to improve tyrosine kinase inhibitor therapyP01CA288662 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Arthur D Lander, Devon A. Lawson · 2025 to 2026
$6.4M
UCI P30 Skin Center Systems Biology CoreP30AR075047 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D · 2019 to 2025
$5.1M
Identifying Therapeutic Targets for Stage III MelanomaR01CA244571 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI GANESAN, ANAND K · 2020 to 2024
$2.4M
Acquisition of nonlinear optical microscopy platform for advanced tissue imagingS10OD028698 · OD · UNIVERSITY OF CALIFORNIA-IRVINE · PI POTMA, ERIC OLAF · 2020 to 2020
$1.6M
PacBio RS Single Molecule, Real-Time (SMRT) DNA SequencerS10OD010794 · OD · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDMEYER, SUZANNE · 2012 to 2012
$600k
High-Throughput DNA SequencerS10OD021718 · OD · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDMEYER, SUZANNE · 2016 to 2016
$600k
High Throughput DNA SequencerS10RR025496 · NCRR · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDMEYER, SUZANNE · 2009 to 2009
$500k
Center for Strategic Scientific Initiatives, National Cancer Institute (NCI Center for Strategic Scientific Initiatives) CA217378NCI NIH HHS P01 CA288662NCI NIH HHS P30 CA062203NCI NIH HHS R01 CA244571NCI NIH HHS U54 CA217378NCRR NIH HHS S10 RR025496NIAMS NIH HHS P30 AR075047NIH HHS S10 OD010794NIH HHS S10 OD021718NIH HHS S10 OD028698
6 · The paper itself

Abstract

Melanomas are genetically heterogeneous, displaying mitogen-activated protein kinase mutations and homozygous loss of tumor suppressor genes. Mouse models combining such mutations produce fast-growing tumors. In contrast, rare, slow-growing tumors arise in mice combining Braf activation with heterozygous loss of Pten. Here we show that similar tumors can arise in albino mice bearing only a Braf mutation. Incidence kinetics suggest a stochastic event underlies tumorigenesis in tumors that arise with only a Braf mutation, yet de novo mutations or structural variants that could explain the incidence of most tumors could not be found. Single-cell transcriptomics of tumors identify a cell type resembling "neural crest-like" cells in human and mouse melanomas. These exist in normal mouse skin, expand upon Braf activation, and persist through serial transplantation; analyses of gene expression suggest they serve as precursors of malignant cells. This state may serve as an intermediate on a slow path to malignancy that may provide a diagnostically and therapeutically important source of cellular heterogeneity.

Indexed as

MelanomaProto-Oncogene Proteins B-rafSkin NeoplasmsAnimalsCarcinogenesisDisease Models, AnimalFemaleGene Expression Regulation, NeoplasticHumansMiceMutationPTEN PhosphohydrolaseSingle-Cell AnalysisBraf protein, mouseProto-Oncogene Proteins B-rafPTEN PhosphohydrolasePten protein, mouse

Identifiers

PMID40571713
PMCPMC12202705

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.