Evidence map›Paper›PMID 40569973›Full record

ArticlePloS one2025

Effect of crystal-to-detector distance shift on data processing in serial crystallography.

Ki Hyun Nam

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Ki Hyun NamCollege of General Education, Kookmin University, Seoul, Republic of Korea.ORCID 0000-0003-3268-354X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Serial crystallography (SX) is an emerging technique to determine the room-temperature structure of macromolecules while minimizing any radiation damage. In SX, many crystals are continuously delivered to the X-ray interaction points. Crystal-to-detector distance (CTDD), an important data processing parameter, changes during sample delivery. However, the ways in which these variations affect the data quality remain unclear. Therefore, this study aimed to assess the impact of CTDD accuracy on SX data quality. Serial synchrotron crystallographic data of hen egg white lysozyme (HEWL) and glucose isomerase (GI) were processed at various CTDDs using three indexing algorithms. The CTDD that yielded the maximum number of indexed images differed from the optimized CTDD, and the resulting indexing trends varied depending on the algorithm used. The indexed data near the actual CTDD exhibited a Gaussian unit cell distribution pattern; however, this pattern became distorted as the CTDD deviated from the actual CTDD value, resulting in changes in the indexed unit cell dimensions. The phase problem was successfully solved even when HEWL and GI data deviated by ±10 mm from the actual CTDD, excluding one dataset. For HEWL processed via MOSFLM, structure refinement statistics maintained acceptable Rfree values despite a ± 10 mm deviation; however, data quality deteriorated with increasing deviation from the actual CTDD. Collectively, these results provide valuable insights for efficient SX data processing and interpretation.

Indexed as

Aldose-Ketose IsomerasesMuramidaseAlgorithmsAnimalsChickensCrystallography, X-RaySynchrotronsAldose-Ketose Isomeraseshen egg lysozymeMuramidasexylose isomerase

Identifiers

PMID40569973
PMCPMC12200686

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.