Evidence map›Paper›PMID 40569608›Full record

ArticleReproduction (Cambridge, England)2025

Single-cell multiomic analysis reveals methylome and transcriptome deviations following oocyte maturation in vitro.

Camilla Benedetti, Carlo Giaccari, Francesco Cecere, Yannick Gansemans, Gavin Kelsey, Antonio Galvão, Simon Andrews, Nima Azari-Dolatabad, Andrea Fernandez-Montoro, Osvaldo Bogado Pascottini and 7 more

Abstract read
In one paragraph

Article in Reproduction (Cambridge, England), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Camilla BenedettiORCID 0000-0001-7904-7175
Carlo Giaccari
Francesco Cecere
Yannick GansemansORCID 0000-0001-5018-044X
Gavin Kelsey
Simon Andrews
Nima Azari-Dolatabad
Andrea Fernandez-MontoroORCID 0000-0003-3737-1473
Osvaldo Bogado PascottiniORCID 0000-0002-5305-2133
Tine De Coster
Filip Van Nieuwerburgh
Erik Mullaart
Krishna Chaitanya PavaniORCID 0000-0001-7043-1007
Ann Van Soom
Katrien Smits

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In brief: In vitro maturation is an essential tool in reproductive technologies, though its impact on oocyte quality remains a concern. This study shows that in vitro maturation alters gene expression and DNA methylation in bovine oocytes compared to in vivo matured oocytes, potentially compromising oocyte quality and developmental competence. Abstract: In vitro maturation of oocytes is a routine step in assisted reproduction but is associated with lower embryo development rates compared to oocyte maturation in vivo. We analyzed the genomic profiles of oocytes from the same cow, either matured in vivo or in vitro, using single-cell methylome and transcriptome sequencing, along with transcriptome analysis of corresponding cumulus cells. Both the transcriptome and methylome of the oocytes matured in vitro were altered. Notable changes included alterations in CpG islands associated with imprinted genes, including decreased methylation levels in MEST (PEG1), NNAT (both implicated in large offspring syndrome), and MIMT1. Transcriptomic analysis of their cumulus cells highlighted impaired mitochondrial function, hypoxia responses, and cell adhesion. Our findings highlight the extent to which the maturation environment can influence key epigenetic regulators and mRNA profiles that affect oocyte quality and subsequent developmental outcomes. The data provide a valuable resource for optimizing assisted reproductive technologies.

Indexed as

DNA MethylationEpigenomeIn Vitro Oocyte Maturation TechniquesOocytesSingle-Cell AnalysisTranscriptomeAnimalsCattleCumulus CellsEpigenesis, GeneticFemaleGene Expression ProfilingGene Expression Regulation, Developmentaldevelopmental competenceimprinted genesin vivo maturationmitochondria

Identifiers

PMID40569608
PMCPMC12257493

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.