Evidence map›Paper›PMID 40568816›Full record

ReviewEpigenomics2025

Techniques to detect physical interactions between genomic regions.

Takayuki Hata, Hodaka Fujii

Abstract readReview
In one paragraph

Review in Epigenomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Takayuki HataDepartment of Biochemistry and Genome Biology, Hirosaki University Graduate School of Medicine, Hirosaki, Japan.ORCID 0000-0001-7313-9263
Hodaka FujiiDepartment of Biochemistry and Genome Biology, Hirosaki University Graduate School of Medicine, Hirosaki, Japan.ORCID 0000-0003-1296-4256

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromatin forms specific intranuclear structures through physical interactions between specific genomic regions mediated by DNA-binding proteins and/or RNAs. Recent efforts have revealed that these genome organizations and dynamics are involved in various functions of genomic DNA, such as regulation of gene expression, DNA replication, cell division, and epigenetic memory, which are mechanisms underlying cell differentiation and disease development. The methods to detect physically interacting chromatin regions and reconstruct 3D genomic organization can be roughly categorized into four types: (i) microscopic observation of visualized intranuclear structures, (ii and iii) sequencing-based methods including proximity ligation-dependent/independent methods, and (iv)

Indexed as

ChromatinGenomicsAnimalsEpigenesis, GeneticHumansChromatin3D genome organizationChromatin interactionDNA-FISHligation-independent methodproximity ligation method

Identifiers

PMID40568816
PMCPMC12321196

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.