ArticlePeerJ. Computer science2025
Validation of automated paper screening for esophagectomy systematic review using large language models.
Article in PeerJ. Computer science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
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Who cites it
3 citing papers in PubMed.
- Automated data extraction for systematic reviews using GPT-5.2 and Google Gemini Pro 3: A dual-large language model approach in orthopaedic research.Knee surgery, sports traumatology, arthroscopy : official journal of the ESSKA · 2026Article
- Review
- Foundation models: Insights and implications for gastrointestinal cancer.World journal of gastroenterology · 2025Review
Corrections and comments
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Background: Large language models (LLMs) offer a potential solution to the labor-intensive nature of systematic reviews. This study evaluated the ability of the GPT model to identify articles that discuss perioperative risk factors for esophagectomy complications. To test the performance of the model, we tested GPT-4 on narrower inclusion criterion and by assessing its ability to discriminate relevant articles that solely identified preoperative risk factors for esophagectomy. Methods: A literature search was run by a trained librarian to identify studies ( Results: The agreement between the GPT model and human decision was 85.58% for perioperative factors and 78.75% for preoperative factors. The AUC value was 0.87 and 0.75 for the perioperative and preoperative risk factors query, respectively. In the evaluation of perioperative risk factors, the GPT model demonstrated a high recall for included studies at 89%, a positive predictive value of 74%, and a negative predictive value of 84%, with a low false positive rate of 6% and a macro-F1 score of 0.81. For preoperative risk factors, the model showed a recall of 67% for included studies, a positive predictive value of 65%, and a negative predictive value of 85%, with a false positive rate of 15% and a macro-F1 score of 0.66. The interobserver reliability was substantial, with a kappa score of 0.69 for perioperative factors and 0.61 for preoperative factors. Despite lower accuracy under more stringent criteria, the GPT model proved valuable in streamlining the systematic review workflow. Preliminary evaluation of inclusion and exclusion justification provided by the GPT model were reported to have been useful by study screeners, especially in resolving discrepancies during title and abstract screening. Conclusion: This study demonstrates promising use of LLMs to streamline the workflow of systematic reviews. The integration of LLMs in systematic reviews could lead to significant time and cost savings, however caution must be taken for reviews involving stringent a narrower and exclusion criterion. Future research is needed and should explore integrating LLMs in other steps of the systematic review, such as full text screening or data extraction, and compare different LLMs for their effectiveness in various types of systematic reviews.
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