Evidence map›Paper›PMID 40565531›Full record

ArticleGenes2025

Revisiting Aurochs Haplogroup C: Paleogenomic Perspectives from Northeastern China.

Yan Zhu, Xindong Hou, Jian Zhao, Bo Xiao, Shiwen Song, Xinzhe Zou, Sizhao Liu, Michael Hofreiter, Xulong Lai

Abstract read
In one paragraph

Article in Genes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yan ZhuSchool of Environmental Studies, China University of Geosciences, Wuhan 430078, China.ORCID 0009-0008-9031-2898
Xindong HouSchool of Environmental Studies, China University of Geosciences, Wuhan 430078, China.ORCID 0000-0001-5185-0812
Jian ZhaoSchool of Environmental Studies, China University of Geosciences, Wuhan 430078, China.
Bo XiaoSchool of Environmental Studies, China University of Geosciences, Wuhan 430078, China.
Shiwen SongSchool of Environmental Studies, China University of Geosciences, Wuhan 430078, China.
Xinzhe ZouSchool of Environmental Studies, China University of Geosciences, Wuhan 430078, China.
Sizhao LiuDepartment of Scientific Research, Dalian Natural History Museum, Dalian 116023, China.
Michael HofreiterInstitute for Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Strasse 24-25, 14476 Potsdam, Germany.ORCID 0000-0003-0441-4705
Xulong LaiState Key Laboratory of Geomicrobiology and Environmental Changes, China University of Geosciences, Wuhan 430078, China.ORCID 0000-0002-2837-0885

Funding

National Natural Science Foundation of China 41972001the "PPP" project jointly funded by China Scholarship Council and DAAD, Germany, funded by German Academic Exchange Service 2016-2041
6 · The paper itself

Abstract

BACKGROUND/

objectivesAurochs (

methodsIn this study, we obtained 13 nearly complete mitochondrial genomes from Late Pleistocene to early Holocene bovine samples from Northeastern China through fossil sample collection, ancient DNA extraction, library construction, and high-throughput sequencing. Based on the acquired ancient DNA data and in combination with previously published bovine data, the phylogenetic status, lineage divergence time, and population dynamics of aurochs in Northeastern China were analyzed.

resultsPhylogenetic analyses and divergence time estimations suggest that the current definition of haplogroup C is overly inclusive, necessitating a refined reclassification of this haplogroup. We also estimated the population dynamics of aurochs in Northeastern China using Bayesian skyline plots found that the maternal effective population size of the aurochs increased significantly during Marine Isotope Stage 5 (MIS5), but began to decrease in the second half of MIS3 before they eventually became extinct.

conclusionsOur results provide new molecular evidence on the phylogenetic status, divergence time, and population dynamics of aurochs in Northeastern China.

Indexed as

Genome, MitochondrialHaplotypesAnimalsCattleChinaDNA, AncientDNA, MitochondrialFossilsPhylogenyDNA, AncientDNA, Mitochondrialaurochsdivergence timepaleogenomesphylogenypopulation dynamics

Identifiers

PMID40565531
PMCPMC12192085

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.