Evidence map›Paper›PMID 40565528›Full record

ReviewGenes2025

Haplotype-Resolved Assembly in Polyploid Plants: Methods, Challenges, and Implications for Evolutionary and Breeding Research.

Zhenning Zhao, Tao Shi

Abstract readReview
In one paragraph

Review in Genes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Zhenning ZhaoState Key Laboratory of Plant Diversity and Specialty Crops, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China.
Tao ShiState Key Laboratory of Plant Diversity and Specialty Crops, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China.ORCID 0000-0003-1907-3552

Funding

National Natural Science Foundation of China 32170240
6 · The paper itself

Abstract

Polyploidization has been one of the key drivers of plant evolution, profoundly influencing plant adaptation in nature and crop traits in agriculture. Deciphering polyploid genomes is a crucial step for understanding evolutionary history and advancing agricultural applications. However, the inherent complexity of polyploid genomes has long hindered accurate assembly and annotation. Recent advances in sequencing technologies and improved assembly algorithms have significantly enhanced the resolution of complex polyploid genomes. These innovations have led to the successful assembly and public release of an increasing number of high-quality polyploid plant genomes. This review summarizes the mechanisms of polyploid formation and their evolutionary relevance, with a focus on recent technological progress in sequencing and genome assembly. On this basis, we further discuss the current key challenges of polyploid genome assembly and the ways to address them.

Indexed as

Genome, PlantHaplotypesPlant BreedingPlantsPolyploidyCrops, AgriculturalEvolution, Molecularcropsevolutiongenome assemblypolyploidy

Identifiers

PMID40565528
PMCPMC12192169

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.