Evidence map›Paper›PMID 40564474›Full record

ArticleBioengineering (Basel, Switzerland)2025

BioGAN: Enhancing Transcriptomic Data Generation with Biological Knowledge.

Francesca Pia Panaccione, Sofia Mongardi, Marco Masseroli, Pietro Pinoli

Abstract read
In one paragraph

Article in Bioengineering (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Francesca Pia PanaccioneDepartment of Electronics, Information, and Bioengineering, Politecnico di Milano, 20133 Milan, Italy.ORCID 0009-0005-8007-963X
Sofia MongardiDepartment of Electronics, Information, and Bioengineering, Politecnico di Milano, 20133 Milan, Italy.
Marco MasseroliDepartment of Electronics, Information, and Bioengineering, Politecnico di Milano, 20133 Milan, Italy.ORCID 0000-0003-2574-1174
Pietro PinoliDepartment of Electronics, Information, and Bioengineering, Politecnico di Milano, 20133 Milan, Italy.ORCID 0000-0001-9786-2851

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The advancement of computational genomics has significantly enhanced the use of data-driven solutions in disease prediction and precision medicine. Yet, challenges such as data scarcity, privacy constraints, and biases persist. Synthetic data generation offers a promising solution to these issues. However, existing approaches based on generative artificial intelligence often fail to incorporate biological knowledge, limiting the realism and utility of generated samples. In this work, we present BioGAN, a novel generative framework that, for the first time, incorporates graph neural networks into a generative adversarial network architecture for transcriptomic data generation. By leveraging gene regulatory and co-expression networks, our model preserves biological properties in the generated transcriptomic profiles. We validate its effectiveness on

Indexed as

biologically informed methodscomputational biologygenerative adversarial networksgenerative artificial intelligencegraph neural networkssynthetic transcriptomic data

Identifiers

PMID40564474
PMCPMC12189748

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.