Evidence map›Paper›PMID 40563980›Full record

ArticleBiology2025

DNA Specimen Preservation Using DESS and DNA Extraction in Museum Collections.

Eri Ogiso-Tanaka, Daisuke Shimada, Akito Ogawa, Genki Ishiyama, Ken-Ichi Okumura, Kentaro Hosaka, Chikako Ishii, Kyung-Ok Nam, Masakazu Hoshino, Shuhei Nomura and 8 more

Abstract read
In one paragraph

Article in Biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Eri Ogiso-TanakaCenter for Molecular Biodiversity Research, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0002-7655-3408
Daisuke ShimadaCenter for Molecular Biodiversity Research, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0002-6913-3659
Akito OgawaCenter for Molecular Biodiversity Research, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0001-8843-8282
Genki IshiyamaCenter for Molecular Biodiversity Research, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0003-3197-1099
Ken-Ichi OkumuraDepartment of Zoology, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.
Kentaro HosakaCenter for Molecular Biodiversity Research, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0002-4469-8303
Chikako IshiiDepartment of Botany, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.
Kyung-Ok NamDepartment of Botany, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.
Masakazu HoshinoResearch Center for Inland Seas, Kobe University, Rokkodai 1-1 Nadaku, Kobe 657-8501, Hyōgo, Japan.ORCID 0000-0003-3631-5429
Shuhei NomuraDepartment of Zoology, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0003-1086-5078
Showtaro KakizoeCenter for Collections, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0003-1179-0864
Yasuhide NakamuraDepartment of Botany, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0003-1632-2883
Isao NishiumiDepartment of Zoology, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0002-4627-3077
Minako Abe ItoCenter for Collections, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0003-1960-1909
Taiju KitayamaDepartment of Botany, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0002-1109-9144
Norio TanakaDepartment of Botany, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0002-4576-9089
Tsuyoshi HosoyaDepartment of Botany, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0001-5360-5677
Utsugi JinboCenter for Molecular Biodiversity Research, National Museum of Nature and Science (NMNS Tokyo), Amakubo 4-1-1, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0009-0008-0107-2635

Funding

Fuji Foundation for Protein Research awarded 2022-2024Japan Society for the Promotion of Science JP21K06299
6 · The paper itself

Abstract

Recent advances in DNA research have increased the necessity for museums to preserve not only morphological specimens but also their DNA, leading us to maintain tissue samples linked to specimens at -80 °C. DNA analysis has become an essential tool for taxonomic research and biodiversity assessment; however, freezer storage for all samples is impractical due to space limitations and operational costs. This creates a pressing need to develop more widely applicable DNA preservation methods. We investigated the comparative effects of traditional preservation methods versus DESS (DMSO/EDTA/saturated NaCl solution) preservation on both morphology and DNA integrity using museum specimens from various taxonomic groups. Our results demonstrated that DESS preservation maintained high-quality DNA fragments exceeding >15 kb at room temperature across all examined species, with nematode samples maintaining DNA integrity even after 10 years of storage. When preserving whole organisms, the optimal preservation solution conditions for maintaining both morphological features and DNA integrity varied among species. Notably, DNA integrity was maintained even after complete evaporation of the DESS solution. These findings suggest that DESS utilization for specimen DNA preservation is effective across many species, not only for long-term storage in environments without freezer facilities but also for temporary preservation until freezing.

Indexed as

algaebirdsDNAfungiinvertebratesmuseum collectionnematodesseagrassesspecimen preserved methods

Identifiers

PMID40563980
PMCPMC12189647

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.