Evidence map›Paper›PMID 40563969›Full record

ArticleBiology2025

A Deep Learning and Explainable AI-Based Approach for the Classification of Discomycetes Species.

Aras Fahrettin Korkmaz, Fatih Ekinci, Şehmus Altaş, Eda Kumru, Mehmet Serdar Güzel, Ilgaz Akata

Abstract read
In one paragraph

Article in Biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Aras Fahrettin KorkmazFaculty of Health Sciences Nutrition, Dietetics Department, Şirinevler Campus, İstanbul Kültür University, 34191 Istanbul, Türkiye.ORCID 0000-0002-3827-3018
Fatih EkinciInstitute of Artificial Intelligence, Ankara University, 06100 Ankara, Türkiye.ORCID 0000-0002-1011-1105
Şehmus AltaşDepartment of Computer Engineering, Faculty of Engineering, Ankara University, 06830 Ankara, Türkiye.
Eda KumruGraduate School of Natural and Applied Sciences, Ankara University, 06830 Ankara, Türkiye.
Mehmet Serdar GüzelDepartment of Computer Engineering, Faculty of Engineering, Ankara University, 06830 Ankara, Türkiye.ORCID 0000-0002-3408-0083
Ilgaz AkataDepartment of Biology, Faculty of Science, Ankara University, 06100 Ankara, Türkiye.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study presents a novel approach for classifying Discomycetes species using deep learning and explainable artificial intelligence (XAI) techniques. The EfficientNet-B0 model achieved the highest performance, reaching 97% accuracy, a 97% F1-score, and a 99% AUC, making it the most effective model. MobileNetV3-L followed closely, with 96% accuracy, a 96% F1-score, and a 99% AUC, while ShuffleNet also showed strong results, reaching 95% accuracy and a 95% F1-score. In contrast, the EfficientNet-B4 model exhibited lower performance, achieving 89% accuracy, an 89% F1-score, and a 93% AUC. These results highlight the superior feature extraction and classification capabilities of EfficientNet-B0 and MobileNetV3-L for biological data. Explainable AI (XAI) techniques, including Grad-CAM and Score-CAM, enhanced the interpretability and transparency of model decisions. These methods offered insights into the internal decision-making processes of deep learning models, ensuring reliable classification results. This approach improves traditional taxonomy by advancing data processing and supporting accurate species differentiation. In the future, using larger datasets and more advanced AI models is recommended for biodiversity monitoring, ecosystem modeling, medical imaging, and bioinformatics. Beyond high classification performance, this study offers an ecologically meaningful approach by supporting biodiversity conservation and the accurate identification of fungal species. These findings contribute to developing more precise and reliable biological classification systems, setting new standards for AI-driven research in biological sciences.

Indexed as

deep learningDiscomycetes classificationEfficientNet-B0explainable artificial intelligence (XAI)fungal taxonomy

Identifiers

PMID40563969
PMCPMC12189597

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.