Evidence map›Paper›PMID 40562774›Full record

ArticleScientific reports2025

Integrated experimental and computational analysis reveals amoxicillin binding dynamics to PBP1a in Staphylococcus aureus.

Seifeldin Elabed, Mariam Ali, Shrouk Hanafy, Sohila Mostafa, Momen Mamdouh, Ayman Meselhi

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Seifeldin ElabedMedical Biophysics Division, Department of Physics, Faculty of Science, Helwan university, Cairo, 11795, Egypt. seifEldin25@science.helwan.edu.eg.
Mariam AliMedical Biophysics Division, Department of Physics, Faculty of Science, Helwan university, Cairo, 11795, Egypt.
Shrouk HanafyMedical Biophysics Division, Department of Physics, Faculty of Science, Helwan university, Cairo, 11795, Egypt.
Sohila MostafaMedical Biophysics Division, Department of Physics, Faculty of Science, Helwan university, Cairo, 11795, Egypt.
Momen MamdouhMedical Biophysics Division, Department of Physics, Faculty of Science, Helwan university, Cairo, 11795, Egypt.
Ayman MeselhiMedical Biophysics Division, Department of Physics, Faculty of Science, Helwan university, Cairo, 11795, Egypt.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Methicillin-resistant Staphylococcus aureus (MRSA) represents a significant global health challenge due to acquired resistance mechanisms, primarily involving penicillin-binding protein 2a (PBP2a), necessitating novel therapeutic strategies. This study explores the potential of amoxicillin-conjugated magnetic nanoparticles (Amox-MNPs) as a means to overcome resistance by targeting the alternative essential protein, PBP1a. Fe₃O₄@SiO₂ core-shell MNPs were synthesized via controlled co-precipitation followed by a silica coating using the Stöber method, and subsequently conjugated with amoxicillin. Physicochemical characterization confirmed nanoparticle formation and successful conjugation. In vitro antibacterial assays against S. aureus ATCC 43,300 (MRSA) revealed that Amox-MNPs exhibited a mean inhibition zone diameter of 26.0 ± 0.82 mm, approximately double that of free amoxicillin (13.5 ± 1.12 mm) at equivalent concentrations (p < 0.05), indicating significantly enhanced antibacterial efficacy. Integrated computational modeling, including molecular docking and dynamics simulations, elucidated the favorable binding (-8.64 kcal/mol docking score;-32.65 kcal/mol MM-PBSA energy) and stable interaction dynamics between amoxicillin and PBP1a, identifying key stabilizing residues. These findings highlight the potential of MNP-mediated delivery to enhance amoxicillin's efficacy against MRSA by targeting PBP1a, offering a promising preclinical strategy requiring further validation in animal models for combating resistant bacterial infections.

Indexed as

AmoxicillinAnti-Bacterial AgentsBacterial ProteinsMetal NanoparticlesMethicillin-Resistant Staphylococcus aureusPenicillin-Binding ProteinsComputer SimulationDrug Delivery SystemsDrug StabilityEnergy MetabolismFerrosoferric OxideHydrogen BondingMagneticsModels, ChemicalMolecular Dynamics SimulationProtein Structure, SecondaryAmoxicillinAnti-Bacterial AgentsBacterial ProteinsFerrosoferric OxidePenicillin-Binding Proteins

Identifiers

PMID40562774
PMCPMC12198363

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.