Evidence map›Paper›PMID 40562726›Full record

ArticleEmerging infectious diseases2025

Emergence of Distinct Salmonella enterica Serovar Enteritidis Lineage since 2020, South Korea.

Eunkyung Shin, Tae-Min La, Jaeil Yoo, Junyoung Kim, Ji-Yeon Hyeon

Abstract readHistorical Article
In one paragraph

Article in Emerging infectious diseases, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Eunkyung Shin
Tae-Min La
Jaeil Yoo
Junyoung Kim
Ji-Yeon Hyeon

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We analyzed whole-genome sequences of Salmonella enterica serovar Enteritidis isolates in South Korea that had the SEGX01.049 pulsed-field gel electrophoresis pattern. That lineage has emerged and circulated in South Korea since 2020, leading to 2 fatal infection cases. We investigated the genomic characteristics and identified potential sources of that lineage. Isolates from outbreaks during 2020-2023 clustered in the Global IIa clade, along with other Salmonella Enteritidis strains from chicken farms in South Korea and human isolates from the United Kingdom. Bayesian molecular clock analysis estimated the time to the most recent common ancestor of our isolates in the Global IIa clade was 2017.57. Moreover, phylogeographic analysis supported substantial statistical evidence (Bayes factor 111.415; posterior probability 0.97) for the introduction of this lineage into South Korea from the United Kingdom. Continued genomic surveillance will be needed to monitor the spread of foodborne pathogens such as Salmonella Enteritidis and improve prevention strategies.

Indexed as

Poultry DiseasesSalmonella enteritidisSalmonella InfectionsSalmonella Infections, AnimalAnimalsChickensDisease OutbreaksGenome, BacterialHistory, 21st CenturyHumansPhylogenyPhylogeographyRepublic of KoreaSerogroupWhole Genome Sequencingantimicrobial resistancebacteriaenteric infectionsoutbreakphylogeographic analysisSalmonella enterica serovar EnteritidisSalmonella EnteritidissalmonellosisSNPSouth Koreawhole-genome sequencingwhole-genome single-nucleotide polymorphism

Identifiers

PMID40562726
PMCPMC12205472

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.