Evidence map›Paper›PMID 40558800›Full record

ArticleJournal of imaging2025

Automation of Multi-Class Microscopy Image Classification Based on the Microorganisms Taxonomic Features Extraction.

Aleksei Samarin, Alexander Savelev, Aleksei Toropov, Aleksandra Dozortseva, Egor Kotenko, Artem Nazarenko, Alexander Motyko, Galiya Narova, Elena Mikhailova, Valentin Malykh

Abstract read
In one paragraph

Article in Journal of imaging, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Aleksei SamarinHigher School of Digital Culture, ITMO University, St. Petersburg 197101, Russia.ORCID 0000-0001-6839-3558
Alexander SavelevFaculty of Radio Engineering and Telecommunications, St. Petersburg Electrotechnical University "LETI", St. Petersburg 197022, Russia.ORCID 0009-0007-8348-4731
Aleksei ToropovHigher School of Digital Culture, ITMO University, St. Petersburg 197101, Russia.ORCID 0009-0008-7555-9446
Aleksandra DozortsevaDepartment of Microbiological Synthesis Technology, St. Petersburg State Institute of Technology, St. Petersburg 190013, Russia.ORCID 0009-0004-7986-5687
Egor KotenkoHigher School of Digital Culture, ITMO University, St. Petersburg 197101, Russia.ORCID 0009-0007-9835-0584
Artem NazarenkoHigher School of Digital Culture, ITMO University, St. Petersburg 197101, Russia.ORCID 0009-0009-8758-9383
Alexander MotykoFaculty of Radio Engineering and Telecommunications, St. Petersburg Electrotechnical University "LETI", St. Petersburg 197022, Russia.ORCID 0000-0003-4241-4298
Galiya NarovaHigher School of Digital Culture, ITMO University, St. Petersburg 197101, Russia.ORCID 0009-0008-2590-3894
Elena MikhailovaHigher School of Digital Culture, ITMO University, St. Petersburg 197101, Russia.ORCID 0000-0002-4650-7566
Valentin MalykhHigher School of Digital Culture, ITMO University, St. Petersburg 197101, Russia.ORCID 0000-0002-4508-2527

Funding

ITMO University Research Projects in AI Initiative 640113
6 · The paper itself

Abstract

This study presents a unified low-parameter approach to multi-class classification of microorganisms (micrococci, diplococci, streptococci, and bacilli) based on automated machine learning. The method is designed to produce interpretable taxonomic descriptors through analysis of the external geometric characteristics of microorganisms, including cell shape, colony organization, and dynamic behavior in unfixed microscopic scenes. A key advantage of the proposed approach is its lightweight nature: the resulting models have significantly fewer parameters than deep learning-based alternatives, enabling fast inference even on standard CPU hardware. An annotated dataset containing images of four bacterial types obtained under conditions simulating real clinical trials has been developed and published to validate the method. The results (Precision = 0.910, Recall = 0.901, and F1-score = 0.905) confirm the effectiveness of the proposed method for biomedical diagnostic tasks, especially in settings with limited computational resources and a need for feature interpretability. Our approach demonstrates performance comparable to state-of-the-art methods while offering superior efficiency and lightweight design due to its significantly reduced number of parameters.

Indexed as

biomedical image processingfilter-based preprocessingmicrobial recognitionmulti-class classificationtaxonomic features extraction

Identifiers

PMID40558800
PMCPMC12194502

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.