Evidence map›Paper›PMID 40555791›Full record

ArticleNature microbiology2025

Segatella copri and gut microbial ammonia metabolism contribute to chronic kidney disease pathogenesis.

Shuchun Lin, Zhonghan Sun, Xinna Zhu, Mengjing Wang, Qian Zhang, Jing Qian, Hui Zhang, Zhendong Mei, Yanni Pu, Mengmeng Kong and 13 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. The gut as a central hub for multi-organ crosstalk in aging.Cellular and molecular life sciences : CMLS · 2026
    Review
  5. Review
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Shuchun Lin *Division of Nephrology, National Clinical Research Center for Aging and Medicine, Huashan Hospital, Fudan University, Shanghai, China.ORCID http://orcid.org/0000-0002-1947-8624
Zhonghan Sun *State Key Laboratory of Genetics and Development of Complex Phenotypes, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China.
Xinna Zhu *Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.
Mengjing WangDivision of Nephrology, National Clinical Research Center for Aging and Medicine, Huashan Hospital, Fudan University, Shanghai, China.
Qian ZhangDivision of Nephrology, National Clinical Research Center for Aging and Medicine, Huashan Hospital, Fudan University, Shanghai, China.ORCID http://orcid.org/0000-0001-5715-4877
Jing QianDivision of Nephrology, National Clinical Research Center for Aging and Medicine, Huashan Hospital, Fudan University, Shanghai, China.
Hui ZhangState Key Laboratory of Genetics and Development of Complex Phenotypes, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China.ORCID http://orcid.org/0000-0002-7358-5375
Zhendong MeiDivision of Preventive Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA.
Yanni PuState Key Laboratory of Genetics and Development of Complex Phenotypes, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China.ORCID http://orcid.org/0000-0002-9603-4584
Mengmeng KongState Key Laboratory of Genetics and Development of Complex Phenotypes, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China.
Peifeng GuoState Key Laboratory of Genetics and Development of Complex Phenotypes, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China.
Xiaofeng ZhouState Key Laboratory of Genetics and Development of Complex Phenotypes, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China.
Jin LiState Key Laboratory of Genetics and Development of Complex Phenotypes, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China.
Xuehui SunState Key Laboratory of Genetics and Development of Complex Phenotypes, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China.
Liang MaDepartment of Nephrology, Institute of Kidney Diseases, West China Hospital of Sichuan University, Chengdu, China.ORCID http://orcid.org/0000-0001-8327-7969
Xueli ZhangTianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.ORCID http://orcid.org/0000-0002-8660-4037
Fangqing ZhaoInstitute of Zoology, Chinese Academy of Sciences, Beijing, China.
Jing NieThe State Key Laboratory of Organ Failure Research, National Clinical Research Center of Kidney Disease, Key Laboratory of Organ Failure Research (Ministry of Education), Division of Nephrology, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, People's Republic of China.
Shangyu HongState Key Laboratory of Genetics and Development of Complex Phenotypes, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China.ORCID http://orcid.org/0000-0001-6144-5618
Jing ChenDivision of Nephrology, National Clinical Research Center for Aging and Medicine, Huashan Hospital, Fudan University, Shanghai, China. chenjing1998@fudan.edu.cn.ORCID http://orcid.org/0000-0002-7259-5280
Xiaofeng WangDivision of Nephrology, National Clinical Research Center for Aging and Medicine, Huashan Hospital, Fudan University, Shanghai, China. xiaofengwang71@163.com.ORCID http://orcid.org/0000-0001-7333-8676
Xiao LiState Key Laboratory of Genetics and Development of Complex Phenotypes, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China. xiao_li@fudan.edu.cn.ORCID http://orcid.org/0000-0002-8733-813X
Yan ZhengState Key Laboratory of Genetics and Development of Complex Phenotypes, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China. yan_zheng@fudan.edu.cn.ORCID http://orcid.org/0000-0003-1129-3147

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alterations in gut microbiota have been linked to chronic kidney disease (CKD), but large-scale studies and mechanistic insights are limited. Here we analysed gut metagenome data from 1,550 older individuals (aged 65-93 years) with comprehensive kidney function measurements. Segatella copri was positively associated with kidney function through microbial ammonia metabolism-related pathways and the asnA gene, which encodes an ammonia-assimilating enzyme. These associations were replicated in two external studies. In mice, ammonia supplementation increased serum levels of creatinine and blood urea nitrogen, accelerating CKD progression. In vitro cultures of S. copri or asnA-overexpressing Escherichia coli reduced ammonia concentrations, which was markedly attenuated in asnA-knockout S. copri. Gavage of either S. copri or asnA-overexpressing E. coli, but not asnA-knockout S. copri, mitigated ammonia-induced CKD progression in mice. These findings highlight the role of gut microbial ammonia metabolism in CKD pathogenesis and underscore the therapeutic potential of microbial-based interventions.

Indexed as

AmmoniaGastrointestinal MicrobiomeRenal Insufficiency, ChronicAgedAged, 80 and overAnimalsBacterial ProteinsEscherichia coliFemaleHumansKidneyMaleMetagenomeMiceMice, Inbred C57BLAmmoniaBacterial Proteins

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.