Evidence map›Paper›PMID 40554678›Full record

ArticleSleep2025

CAISR: achieving human-level performance in automated sleep analysis across all clinical sleep metrics.

Samaneh Nasiri, Wolfgang Ganglberger, Thijs Nassi, Erik-Jan Meulenbrugge, Valdery Moura Junior, Manohar Ghanta, Aditya Gupta, Katie L Stone, Magnus Ruud Kjaer, Oliver Sum-Ping and 8 more

Abstract read
In one paragraph

Article in Sleep, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
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  8. Automated analysis of the American Academy of Sleep Medicine Inter-Scorer Reliability gold-standard polysomnogram dataset.Journal of clinical sleep medicine : JCSM : official publication of the American Academy of Sleep Medicine · 2025
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Samaneh NasiriDepartment of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA.ORCID 0000-0002-4216-026X
Wolfgang GanglbergerDepartment of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA.ORCID 0000-0002-6029-2450
Thijs NassiDepartment of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA.ORCID 0000-0003-0269-3405
Erik-Jan MeulenbruggeDepartment of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA.
Valdery Moura JuniorDepartment of Neurology, Massachusetts General Hospital, Boston, MA, USA.ORCID 0000-0001-5735-9143
Manohar GhantaDepartment of Neurology, Massachusetts General Hospital, Boston, MA, USA.
Aditya GuptaDepartment of Neurology, Massachusetts General Hospital, Boston, MA, USA.ORCID 0000-0002-5243-368X
Katie L StoneDepartment of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA.
Magnus Ruud KjaerSchool of Medicine, Stanford University, Palo Alto, CA, USA.
Oliver Sum-PingSchool of Medicine, Stanford University, Palo Alto, CA, USA.
Emmanuel MignotSchool of Medicine, Stanford University, Palo Alto, CA, USA.ORCID 0000-0002-6928-5310
Dennis HwangKaiser Permanente, San Bernardino County Sleep Disorders Center. San Bernardino, CA, USA.
Lynn Marie TrottiDepartment of Neurology and Emory Sleep Center, Emory University School of Medicine, Atlanta, GA, USA.ORCID 0000-0003-2329-6847
Gari D CliffordDepartment of Biomedical Informatics, Emory School of Medicine, Atlanta, GA, USA.ORCID 0000-0002-5709-201X
Umakanth KatwaDepartment of Neurology, Harvard Medical School, Boston, MA, USA.
Haoqi SunDepartment of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA.ORCID 0000-0002-5041-8312
Robert J ThomasDepartment of Neurology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-5575-3953
M Brandon WestoverDepartment of Neurology, Beth Israel Deaconess Medical Center, Boston, MA, USA.

Funding

Late-onset Unexplained Epilepsy as a Risk Factor for DementiaR01NS130119 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI Alice D Lam · 2023 to 2026
$8.7M
Data-Driven Sleep Biomarkers of Brain Health, Heart Health, and MortalityR01HL161253 · NHLBI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI CLIFFORD, GARI DAVID, MIGNOT, EMMANUEL J · 2022 to 2025
$8.3M
National Sleep Research Resource (NSRR)R24HL114473 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI REDLINE, SUSAN S., ZHANG, GUO-QIANG · 2013 to 2017
$7.5M
DATA COORDINATING CENTER FOR SLEEP HEART STUDYU01HL064360 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI DIENER-WEST, MARIE · 1999 to 2007
$4.4M
Comparative Safety of Seizure Prophylaxis within the Medicare ProgramR01AG073410 · NIA · MASSACHUSETTS GENERAL HOSPITAL · PI Lidia Maria Veras Rocha de Moura · 2021 to 2026
$4.1M
Low Neurophysiologic Resistance to Anesthetics as a Marker of Preclinical/Prodromal Alzheimer's Disease and Neurovascular Pathology, Delirium risk and InattentionR01AG073598 · NIA · STANFORD UNIVERSITY · PI Miles Berger · 2022 to 2026
$3.8M
Prospective Validation of Neurophysiologic Outcome Prediction in Acute Brain InjuryR01NS126282 · NINDS · BETH ISRAEL DEACONESS MEDICAL CENTER · PI Aaron F Struck, Michael Brandon Westover · 2023 to 2026
$2.9M
Big Data and Deep Learning for the Interictal-Ictal-Injury ContiuumR01NS107291 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI WESTOVER, MICHAEL BRANDON · 2018 to 2022
$2.8M
THE SLEEP HEART HEALTH STUDY: READING CENTER APPLICATIONU01HL063463 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI REDLINE, SUSAN S. · 1999 to 2007
$2.8M
Establishing a Brain Health Index from the Sleep ElectroencephalogramRF1NS120947 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI CASH, SYDNEY S, THOMAS, ROBERT JOSEPH · 2021 to 2021
$2.4M
The Sleep Heart Health Study (SHHS)U01HL053938 · NHLBI · UNIVERSITY OF ARIZONA · PI QUAN, STUART F. · 1994 to 2007
$2.0M
Comparative Effectiveness of EEG-Guided Anti-Seizure Treatment in Acute Brain InjuryR01NS131347 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI Sahar F Zafar · 2024 to 2026
$1.9M
NHLBI NIH HHS R01 HL161253NHLBI NIH HHS R24 HL114473NHLBI NIH HHS U01 HL053916NHLBI NIH HHS U01 HL053931NHLBI NIH HHS U01 HL053934NHLBI NIH HHS U01 HL053937NHLBI NIH HHS U01 HL053938NHLBI NIH HHS U01 HL053941NHLBI NIH HHS U01 HL063463NHLBI NIH HHS U01 HL064360NIA NIH HHS R01 AG073410NIA NIH HHS R01 AG073598NINDS NIH HHS R01 NS107291NINDS NIH HHS R01 NS120947NINDS NIH HHS R01 NS126282NINDS NIH HHS R01 NS130119NINDS NIH HHS R01 NS131347NINDS NIH HHS RF1 NS120947
6 · The paper itself

Abstract

STUDY

objectivesTo develop and validate a Complete Artificial Intelligence Sleep Report system (CAISR), a system for comprehensive automated sleep analysis, including sleep staging, arousal detection, apnea identification, and limb movement analysis.

methodsWe utilized a large diverse dataset from four cohorts (MGH, MESA, MrOS, SHHS) comprising 25,749 participants to develop CAISR. Following American Academy of Sleep Medicine (AASM) guidelines, CAISR performs four tasks: it stages sleep into five categories (Wake, NREM 1, NREM 2, NREM 3, REM), detects arousals, detects and classifies breathing events (Obstructive Apnea, Central Apnea, Mixed Apnea, Hypopnea, and RERA), and detects limb movements and categorizes them as periodic or isolated. We tested CAISR against multiple datasets independently annotated by multiple experts, including UPenn (69 subjects, 6 experts), BITS (98 subjects, 3 experts), and Stanford (100 subjects, three experts). Sleep staging and arousal detection were accomplished using customized deep neural networks, while breathing event detection and classification and limb movement analysis were accomplished using rule-based signal processing approaches. We quantified CAISR performance with three metrics: Cohen's Kappa, area under the receiver operating characteristic curve (AUROC), and area under the precision-recall curve (AUPRC). To determine whether CAISR performed on par with human experts, we compared expert inter-rater reliability (IRR) with algorithm-expert IRR.

resultsThe CAISR model showed strong overall performance across the four tasks: sleep staging, arousal detection, apnea detection, and limb movement detection. In sleep staging, the model achieved AUROC values ranging from 0.82 to 0.97 and AUPRC values between 0.63 and 0.90 across the BITS, Stanford, and Penn datasets, indicating high classification accuracy. The Kappa agreement analysis showed that in the BITS and Stanford datasets, CAISR outperformed human experts, with non-overlapping confidence intervals indicating superiority (Kappa values around 0.7 to 0.8 for CAISR vs. experts). In the Penn dataset, the model's performance was comparable to experts, with overlapping confidence intervals suggesting non-inferiority. For arousal detection, the model maintained reliable performance, with AUROC values ranging from 0.83 to 0.94 and AUPRC values from 0.67 to 0.85, and Kappa analysis showing overlapping confidence intervals, indicating comparable performance to experts in both the BITS and Stanford datasets (Kappa values for CAISR around 0.6 to 0.75). In apnea detection, including the detection of obstructive, central, and mixed apnea, the CAISR model achieved competitive results in the BITS dataset with AUROC values between 0.81 and 0.95 and AUPRC values between 0.58 and 0.82, but in the Stanford dataset, it underperformed compared to human experts, as shown by non-overlapping confidence intervals and lower Kappa values (around 0.55 to 0.65). Finally, in limb movement detection, the model demonstrated superior performance in the BITS dataset, with AUROC values of 0.9 to 0.96 and AUPRC values between 0.75 and 0.85, and Kappa analysis indicating significantly higher reliability compared to experts (CAISR Kappa around 0.8, with non-overlapping confidence intervals). In the Stanford dataset, CAISR's performance was comparable to experts, with overlapping confidence intervals suggesting non-inferiority (Kappa values around 0.65 to 0.7). Overall, the CAISR model consistently exhibited high classification performance and reliability across tasks, often matching or surpassing expert-level performance, with particularly strong results in sleep staging and limb detection.

conclusionsThe CAISR model demonstrated high classification accuracy and reliability across sleep staging, arousal, apnea, and limb movement detection tasks, matching or surpassing human expert performance. Human errors and systematic biases in the annotation of micro-events during sleep, such as arousal and apnea detection, likely contributed to variability in expert performance, while the CAISR model showed more consistent results, reducing the impact of these biases and increasing overall reliability across task.

Indexed as

Artificial IntelligencePolysomnographySleepSleep StagesArousalFemaleHumansMaleMiddle AgedReproducibility of Resultsapnea detectionarousal detectiondeep learningfew-shot learninginter-rater reliabilitylimb movementrule-based modelsleep stagingtransfer learning

Identifiers

PMID40554678
PMCPMC12341759

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.