Evidence map›Paper›PMID 40554460›Full record

ArticlePLoS biology2025

Single-cell and spatiotemporal profile of ovulation in the mouse ovary.

Ruixu Huang, Caroline E Kratka, Jeffrey Pea, Cai McCann, Jack Nelson, John P Bryan, Luhan T Zhou, Daniela D Russo, Emily J Zaniker-Gomez, Achla H Gandhi and 5 more

Abstract read
In one paragraph

Article in PLoS biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Ruixu HuangThayer School of Engineering at Dartmouth College, Hanover, New Hampshire, United States of America.
Caroline E KratkaDepartment of Obstetrics and Gynecology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, United States of America.
Jeffrey PeaDepartment of Obstetrics and Gynecology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, United States of America.
Cai McCannSpatial Technology Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Jack NelsonSpatial Technology Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
John P BryanSpatial Technology Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Luhan T ZhouDepartment of Obstetrics and Gynecology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, United States of America.
Daniela D RussoKlarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Emily J Zaniker-GomezDepartment of Obstetrics and Gynecology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, United States of America.
Achla H GandhiThayer School of Engineering at Dartmouth College, Hanover, New Hampshire, United States of America.
Alex K ShalekKlarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Brian ClearyFaculty of Computing and Data Sciences, Department of Biomedical Engineering, Department of Biology, Program in Bioinformatics, Boston University, Boston, Massachusetts, United States of America.
Samouil L FarhiSpatial Technology Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Francesca E DuncanDepartment of Obstetrics and Gynecology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, United States of America.
Brittany A GoodsThayer School of Engineering at Dartmouth College, Hanover, New Hampshire, United States of America.ORCID 0000-0002-5962-9570

Funding

Comprehensive single-cell atlas of the developing mouse brainU01MH130962 · NIMH · HARVARD UNIVERSITY · PI Paola Arlotta, Tomasz Nowakowski · 2022 to 2026
$33.3M
Zhao - Proj 2P20GM130454 · NIGMS · DARTMOUTH COLLEGE · PI MICHAEL L WHITFIELD · 2019 to 2026
$27.2M
Scaling up spatial RNA profiling with compressed sensingRF1MH121289 · NIMH · BROAD INSTITUTE, INC. · PI CHEN, FEI, ELDAR, YONINA · 2019 to 2019
$1.6M
Northwestern Center for Reproductive Science Predoctoral Training Program in Reproductive Science, Medicine, and TechnologyT32HD094699 · NICHD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Ji-Yong Julie Kim · 2019 to 2026
$1.3M
The 10x Chromium System for High-Throughput Single Cell GenomicsS10OD025120 · OD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI WANG, XINKUN · 2019 to 2019
$79k
NICHD NIH HHS T32 HD094699NIGMS NIH HHS P20 GM130454NIH HHS S10 OD025120NIMH NIH HHS RF1 MH121289NIMH NIH HHS U01 MH130962
6 · The paper itself

Abstract

Ovulation is a spatiotemporally coordinated process that involves several tightly controlled events, including oocyte meiotic maturation, cumulus expansion, follicle wall rupture and repair, and ovarian stroma remodeling. To date, no studies have detailed the precise window of ovulation at single-cell resolution. Here, we performed parallel single-cell RNA-seq and spatial transcriptomics on paired mouse ovaries across an ovulation time course to map the spatiotemporal profile of ovarian cell types. We show that major ovarian cell types exhibit time-dependent transcriptional states enriched for distinct functions and have specific localization profiles within the ovary. We also identified gene markers for ovulation-dependent cell states and validated these using orthogonal methods. Finally, we performed cell-cell interaction analyses to identify ligand-receptor pairs that may drive ovulation, revealing previously unappreciated interactions. Taken together, our data provides a rich and comprehensive resource of murine ovulation that can be mined for discovery by the scientific community.

Indexed as

OvaryOvulationSingle-Cell AnalysisAnimalsFemaleGene Expression ProfilingMiceMice, Inbred C57BLOocytesOvarian FollicleRNA-SeqTranscriptome

Identifiers

PMID40554460
PMCPMC12186953

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.