Evidence map›Paper›PMID 40553022›Full record

ReviewChemical reviews2025

From Concepts to Inhibitors: A Blueprint for Targeting Protein-Protein Interactions.

Seong Ho Hong, Thu Nguyen, Joseph F Ongkingco, Alex Nazzaro, Paramjit S Arora

Abstract readReview
In one paragraph

Review in Chemical reviews, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Dibenzo[International journal of molecular sciences · 2026
    Article
  2. De Novo-Designed Bifunctional Proteins for Targeted Protein Degradation.Journal of the American Chemical Society · 2026
    Article
  3. Article
  4. Photoredox-Catalyzed Lysine C(spJournal of the American Chemical Society · 2026
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Pharmacophore-driven antibody discovery on the yeast surface.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Seong Ho HongDepartment of Chemistry, New York University, New York, New York 10003, United States.ORCID 0000-0002-8634-452X
Thu NguyenDepartment of Chemistry, New York University, New York, New York 10003, United States.
Joseph F OngkingcoDepartment of Chemistry, New York University, New York, New York 10003, United States.
Alex NazzaroDepartment of Chemistry, New York University, New York, New York 10003, United States.
Paramjit S AroraDepartment of Chemistry, New York University, New York, New York 10003, United States.ORCID 0000-0001-5315-401X

Funding

Protein Domain Mimics as Modulators of Biomolecular InteractionsR35GM130333 · NIGMS · NEW YORK UNIVERSITY · PI Paramjit S Arora · 2019 to 2026
$6.0M
NIGMS NIH HHS R35 GM130333
6 · The paper itself

Abstract

Protein-protein interactions are no longer considered undruggable because of the conceptual and technical advances that allow inhibitors to be generated using rational design principles and high-throughput screening methods. Here we review the concepts and approaches that have underpinned the progress in this field. We begin by assessing what makes a protein surface more tractable than others with a focus on the recent success in targeting Ras, which has long served as a poster child of a therapeutically important yet undruggable target. We discuss computational approaches to dissect protein surfaces to design macrocycles and miniprotein ligands. Traditional drug discovery has benefitted from leveraging natural products but this benefit has not extended to the design of ligands for protein surfaces because few natural products have been characterized as inhibitors of protein complexes. However, nature does provide a template in the form of binding epitopes of partner proteins. We review design of protein structure mimics that enable rational design of inhibitors through multiple weak contacts. Lastly, we focus on contemporary screening methods that are being merged with constrained peptides to offer unprecedented side chain diversity on conformationally defined scaffolds. We will focus on the concepts underlying advancements in the field rather than the application of these concepts and technologies that have led to inhibitors of specific interactions.

Indexed as

ProteinsDrug DesignDrug DiscoveryHumansLigandsProtein BindingLigandsProteins

Identifiers

PMID40553022
PMCPMC12291216

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.