Evidence map›Paper›PMID 40551774›Full record

ArticleFrontiers in plant science2025

A long term time lapse microscopy technique for Arabidopsis roots.

Laura R Lee, Ramin Rahni, Kenneth D Birnbaum

Abstract read
In one paragraph

Article in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Laura R LeeCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, United States.
Ramin RahniCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, United States.
Kenneth D BirnbaumCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, United States.

Funding

Regeneration of Complex Patterns in PlantsR35GM136362 · NIGMS · NEW YORK UNIVERSITY · PI Kenneth David Birnbaum · 2020 to 2026
$3.1M
NIGMS NIH HHS R35 GM136362
6 · The paper itself

Abstract

Time lapse microscopy is a transformative technique for plant cell and developmental biology. Light sheet microscopy, which manipulates the amount of light a sample is exposed to in order to minimize phototoxicity and maximize signal intensity, is an increasingly popular tool for time lapse imaging. However, many light sheet imaging systems are not designed with the unique properties of plant samples in mind. Recent advances have decreased the cost and increased the technical accessibility of light sheet microscopy, but plant samples still require special preparation to be compatible with these new systems. Here, we apply a novel light sheet microscopy system to regenerating Arabidopsis roots damaged via laser ablation. To adapt this system for Arabidopsis roots we establish a new protocol for sample mounting, as well as an automated root tip tracking system that requires no additional proprietary software. The methods presented here can be used to increase researcher access to long-term time-lapse imaging in Arabidopsis biology.

Indexed as

light sheet microscopemicroscopyregenerationroot developmenttime lapse microscopy

Identifiers

PMID40551774
PMCPMC12183276

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.