Evidence map›Paper›PMID 40551313›Full record

ArticleJournal of biophotonics2025

Depth-Resolved Attenuation Coefficient Quantification During Murine Embryonic Brain Development.

Md Mobarak Karim, Achuth Nair, Manmohan Singh, Maryam Hatami, Salavat R Aglyamov, Kirill V Larin

Abstract read
In one paragraph

Article in Journal of biophotonics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Md Mobarak KarimDepartment of Biomedical Engineering, University of Houston, Houston, Texas, USA.
Achuth NairDepartment of Biomedical Engineering, University of Houston, Houston, Texas, USA.
Manmohan SinghDepartment of Biomedical Engineering, University of Houston, Houston, Texas, USA.ORCID 0000-0002-8396-5451
Maryam HatamiDepartment of Biomedical Engineering, University of Houston, Houston, Texas, USA.
Salavat R AglyamovDepartment of Biomedical Engineering, University of Houston, Houston, Texas, USA.
Kirill V LarinDepartment of Biomedical Engineering, University of Houston, Houston, Texas, USA.ORCID 0000-0002-5532-5027

Funding

Research Programming ModuleP30EY007551 · NEI · UNIVERSITY OF HOUSTON · PI Nimesh Bhikhu Patel · 1988 to 2026
$16.4M
Optical Coherence Tomography to Study Effect of Poly - Drug Exposure on Fetal Brain DevelopmentR01HD086765 · NICHD · UNIVERSITY OF HOUSTON · PI Kirill V Larin, Irina Larina · 2016 to 2026
$5.0M
Structural and Molecular Phenotyping of Embryonic Development through Multi-Modal Optical ImagingR01HL146745 · NHLBI · UNIVERSITY OF HOUSTON · PI MAYERICH, DAVID · 2019 to 2023
$3.7M
Biomechanics of Neural Tube Development using Brillouin-OCT MultimodalityR01HD095520 · NICHD · UNIVERSITY OF HOUSTON · PI FINNELL, RICHARD H., LARIN, KIRILL V · 2018 to 2022
$3.3M
Biomechanics of early mammalian cardiogenesisR01HD096335 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI LARINA, IRINA · 2018 to 2022
$2.8M
Prenatal alcohol/cannabinoid co-exposures and fetal brain developmentR01AA028406 · NIAAA · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI LARIN, KIRILL V, MIRANDA, RAJESH C · 2020 to 2024
$2.6M
Phenotyping embryonic mammalian heart function using OCTR01HL095586 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI DICKINSON, MARY E, LARIN, KIRILL V · 2009 to 2012
$1.7M
NEI NIH HHS P30 EY007551NHLBI NIH HHS R01 HL095586NHLBI NIH HHS R01 HL146745NIAAA NIH HHS R01 AA028406NICHD NIH HHS R01 HD086765NICHD NIH HHS R01 HD095520NICHD NIH HHS R01 HD096335NIH HHS P30EY007551FNIH HHS R01AA028406NIH HHS R01HD086765NIH HHS R01HD096335NIH HHS R01HL146745
6 · The paper itself

Abstract

Brain development is a highly regulated process with significant morphological and functional transformations during early embryogenesis. Here, we quantified the optical attenuation coefficient (OAC) during murine embryonic brain development with a focus on crucial areas, including the forebrain, midbrain, and hindbrain from embryonic day (E)9.5 to E13.5. At earlier developmental stages, the estimation of OAC in these regions is comparatively low due to the low cell density and more straightforward pattern of extracellular matrix (ECM) composition, which results in minimal scattering and signal attenuation. However, as the embryo grows (by E13.5), increased ECM density and vascularization, along with the formation of blood vessels, contribute to enhanced signal attenuation, thereby reducing light penetration. As a result of gradual changes in cellular composition, tissue architecture, and extracellular matrix density, the study's findings demonstrate an increasing trend in OAC across the midbrain, hindbrain, and forebrain during embryonic development from E9.5 to E13.5.

Indexed as

BrainEmbryonic DevelopmentOptical PhenomenaAnimalsExtracellular MatrixMiceattenuation coefficientdevelopmentembryooptical coherence tomography

Identifiers

PMID40551313
PMCPMC12225611

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.