Evidence map›Paper›PMID 40551031›Full record

ArticleMolecular genetics and genomics : MGG2025

Transcriptome profiling reveals the regulatory mechanisms of AsA (ascorbic acid) and flavonoid synthesis and metabolic processes in fruit development of Ribes nigrum L.

Xuelin Zhang, Danni Zhang, Weihua Li, Jiachen Li, Shuxian Li, Weixia Zhang, Peng Zhang, Kaojia Cui, Junwei Huo, Huixin Gang and 1 more

Abstract read
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In one paragraph

Article in Molecular genetics and genomics : MGG, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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0cells of the map it votes in
2citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Evaluation and Selection ofPlants (Basel, Switzerland) · 2026
    Article
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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Xuelin ZhangCollege of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China.
Danni ZhangCollege of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China.
Weihua LiCollege of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China.
Jiachen LiCollege of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China.
Shuxian LiCollege of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China.
Weixia ZhangCollege of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China.
Peng ZhangCollege of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China.
Kaojia CuiCollege of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China.
Junwei HuoCollege of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China.
Huixin GangCollege of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China. ganghx@neau.edu.cn.
Dong QinCollege of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China. dongq9876@126.com.ORCID http://orcid.org/0000-0001-9281-4615

Funding

Academic Backbone Project of Northeast Agricultural University 20XG04Central Government Supports the Reform and Development Fund Talent Training Project of Local Colleges and Universities, China Central Government Supports the Reform and Development Fund Talent Training Project of Local Colleges and Universities, ChinaChina Postdoctoral Science Foundation 2022MD713724National Key R&D Program of China 2022YFD1600500
6 · The paper itself

Abstract

Blackcurrant (Ribes nigrum L.), a nutrient-rich cold-climate berry, accumulates ascorbic acid (AsA) and flavonoids critical for fruit quality, yet their regulatory mechanisms during development remain poorly characterized. This study systematically investigated AsA and flavonoid dynamics across four developmental stages (young, expansion, veraison, ripe) in two contrasting varieties, 'Adelinia' and 'Heifeng', while integrating transcriptomics to elucidate metabolic pathways and regulatory networks. We observed a progressive decline in AsA content during fruit maturation, governed by coordinated regulation of biosynthesis (GDP-L-galactose phosphorylase-driven) and recycling pathways (mediated by monodehydroascorbate reductase). Flavonoid levels peaked at the young fruit stage, sharply decreased during veraison, and showed varietal specificity, with 'Heifeng' exhibiting higher accumulation. Co-expression networks identified 4 core structural genes and 6 transcription factors (TFs) regulating AsA metabolism, alongside 8 structural genes and 9 TFs associated with flavonoid biosynthesis. Comparative analysis of fruit size revealed divergent hormone signaling between varieties, with auxin- and cytokinin-related DEGs in the plant hormone transduction pathway (ko04075) strongly correlated with cell expansion. Photosynthesis-antenna protein pathway genes (ko00196) further contributed to size variation, suggesting energy allocation trade-offs during ripening. These findings advance the molecular understanding of AsA and flavonoid regulation in blackcurrant, highlighting cultivar-specific metabolic strategies. The identified genes and TFs provide actionable targets for breeding programs aimed at enhancing nutritional quality and yield, while insights into hormone signaling offer practical frameworks for optimizing growth regulator applications in cultivation.

Indexed as

Ascorbic AcidFlavonoidsFruitRibesGene Expression ProfilingGene Expression Regulation, PlantPlant ProteinsTranscription FactorsTranscriptomeAscorbic AcidFlavonoidsPlant ProteinsTranscription FactorsAsAFlavonoidsPlant hormoneRibes nigrum L.Transcriptional analysis

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.