Evidence map›Paper›PMID 40548539›Full record

ArticleAlimentary pharmacology & therapeutics2025

Clinical Utility and Cost-Effectiveness of Pretreatment NUDT15 Pharmacogenetic Testing to Prevent Thiopurine-Induced Myelosuppression: A Genotype-First Reverse Phenotyping Cohort Study Within the UK NIHR Inflammatory Bowel Disease Bioresource.

Christopher Roberts, Jaime Peters, Aleksejs Sazonvos, Neil Goodman, Mohmmed Sharip, Rebecca Smith, Maria Bishara, Claire Bewshea, Simeng Lin, Neil Chanchlani and 25 more

Abstract read
In one paragraph

Article in Alimentary pharmacology & therapeutics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors.

Christopher RobertsUniversity of Exeter Inflammatory Bowel Disease and Pharmacogenetics Research Group, Exeter, UK.ORCID https://orcid.org/0000-0002-6215-8044
Jaime PetersExeter Test Group, Department of Health and Community Sciences, The Medical School, University of Exeter, Exeter, UK.ORCID https://orcid.org/0000-0003-1778-3518
Aleksejs SazonvosWellcome Sanger Institute, Hinxton, Cambridgeshire, UK.ORCID https://orcid.org/0009-0002-2413-0451
Neil GoodmanExeter Genomics Laboratory, Royal Devon University Healthcare NHS Foundation Trust, Exeter, Devon, UK.
Mohmmed SharipDepartment of Gastroenterology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.ORCID https://orcid.org/0000-0001-6385-6971
Rebecca SmithUniversity of Exeter Inflammatory Bowel Disease and Pharmacogenetics Research Group, Exeter, UK.ORCID https://orcid.org/0000-0003-1297-9773
Maria BisharaUniversity of Exeter Inflammatory Bowel Disease and Pharmacogenetics Research Group, Exeter, UK.ORCID https://orcid.org/0009-0007-4484-7624
Claire BewsheaUniversity of Exeter Inflammatory Bowel Disease and Pharmacogenetics Research Group, Exeter, UK.ORCID https://orcid.org/0000-0002-0965-9587
Simeng LinUniversity of Exeter Inflammatory Bowel Disease and Pharmacogenetics Research Group, Exeter, UK.ORCID https://orcid.org/0000-0002-4201-4879
Neil ChanchlaniUniversity of Exeter Inflammatory Bowel Disease and Pharmacogenetics Research Group, Exeter, UK.ORCID https://orcid.org/0000-0003-0207-6706
Phoebe HodgesUniversity of Exeter Inflammatory Bowel Disease and Pharmacogenetics Research Group, Exeter, UK.ORCID https://orcid.org/0000-0002-7231-0804
Fakhirah BadrulhishamUniversity of Exeter Inflammatory Bowel Disease and Pharmacogenetics Research Group, Exeter, UK.ORCID https://orcid.org/0009-0001-1765-8103
Aamir SaifuddinDepartment of Gastroenterology, St Marks Hospital and Academic Institute, Gastroenterology, London, UK.ORCID https://orcid.org/0000-0002-5888-5556
Sean CarlsonDepartment of Gastroenterology, Bart's Health NHS Trust, London, UK.ORCID https://orcid.org/0009-0003-8222-535X
Andrea CentrittoDepartment of Gastroenterology, Guy's and St Thomas' NHS Foundation Trust, London, UK.ORCID https://orcid.org/0009-0007-6682-2700
Alexandra MarleyDepartment of Gastroenterology, Royal Wolverhampton NHS Trust, Wolverhampton, UK.ORCID https://orcid.org/0000-0001-6042-6925
Muhammad SaadDepartment of Gastroenterology, Royal Wolverhampton NHS Trust, Wolverhampton, UK.ORCID https://orcid.org/0000-0003-0363-6277
Karishma Sethi-AoraDepartment of Gastroenterology, Northern Care Alliance NHS Foundation Trust (Bury Care Organisation), Salford, UK.ORCID https://orcid.org/0000-0002-5542-3225
Laura WhiteDepartment of Gastroenterology, St Marks Hospital and Academic Institute, Gastroenterology, London, UK.ORCID https://orcid.org/0000-0002-4237-4989
Alaa AbdelmeguidDepartment of Gastroenterology, Hull University Teaching Hospitals NHS Trust, Hull, UK.ORCID https://orcid.org/0000-0003-3412-3941
Laetitia PeleNational Institute for Health and Care Research IBD BioResource for Translational Research, Cambridge, UK.ORCID https://orcid.org/0000-0002-2196-9721
Shaji SebastianDepartment of Gastroenterology, Hull University Teaching Hospitals NHS Trust, Hull, UK.ORCID https://orcid.org/0000-0002-3670-6545
Christian SelingerLeeds Gastroenterology Institute, Leeds Teaching Hospitals NHS Trust, Leeds, UK.ORCID https://orcid.org/0000-0003-2022-5859
Peter IrvingDepartment of Gastroenterology, Guy's and St Thomas' NHS Foundation Trust, London, UK.ORCID https://orcid.org/0000-0003-0972-8148
Laura FachalWellcome Sanger Institute, Hinxton, Cambridgeshire, UK.ORCID https://orcid.org/0000-0002-7256-9752
Gareth WalkerDepartment of Gastroenterology and Hepatology, Royal Brisbane and Women's Hospital Brisbane, Brisbane, Queensland, Australia.ORCID https://orcid.org/0000-0002-3883-8816
Rachel PalmerNHS Southwest Genomic Medicine Service Alliance, Bristol Genetics Laboratory, Southmead Hospital, Bristol, UK.ORCID https://orcid.org/0009-0006-6253-3330
Nick KennedyUniversity of Exeter Inflammatory Bowel Disease and Pharmacogenetics Research Group, Exeter, UK.ORCID https://orcid.org/0000-0003-4368-1961
Jayne HoughtonExeter Genomics Laboratory, Royal Devon University Healthcare NHS Foundation Trust, Exeter, Devon, UK.
Mary DoonaDepartment of Gastroenterology, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK.ORCID https://orcid.org/0000-0001-9533-3745
Christopher LambDepartment of Gastroenterology, Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK.ORCID https://orcid.org/0000-0002-7271-4956
Chris HydeExeter Test Group, Department of Health and Community Sciences, The Medical School, University of Exeter, Exeter, UK.ORCID https://orcid.org/0000-0002-7349-0616
Miles ParkesDepartment of Gastroenterology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.ORCID https://orcid.org/0000-0002-6467-0631
James GoodhandUniversity of Exeter Inflammatory Bowel Disease and Pharmacogenetics Research Group, Exeter, UK.ORCID https://orcid.org/0000-0003-3112-376X
Tariq AhmadUniversity of Exeter Inflammatory Bowel Disease and Pharmacogenetics Research Group, Exeter, UK.ORCID https://orcid.org/0000-0002-6058-5528

Funding

Medical Research Council MRC/X502820/1Nova laboratoriesUniversity of ExeterWellcome Trust
6 · The paper itself

Abstract

backgroundThe clinical utility and cost-effectiveness of pre-thiopurine NUDT15 pharmacogenetic testing in European and admixed populations are unknown.

aimsTo report the prevalence, penetrance, expressivity, and pathogenicity of NUDT15 variant allele carriage and the diagnostic accuracy and cost-effectiveness of an inexpensive loop-mediated isothermal amplification (LAMP) test.

methodsRetrospective case-matched cohort study of rates of severe myelosuppression in patients with and without loss-of-function NUDT15 variant allele(s) treated with a thiopurine.

resultsOverall, 1.3% of Europeans and 11.7% of South Asians carried a variant allele. Severe myelosuppression was associated with NUDT15 variant allele carriage (11.3% vs 0.95%; p < 0.001). Carriage of a single *3, *6 or *9 variant allele was associated with a shorter time to severe myelosuppression. Numbers needed to genotype to prevent myelosuppression in Europeans and South Asians were 786 and 23. Variant calling using the LAMP assay was fully concordant with Sanger sequencing (n = 154). It improved the safety of thiopurine dosing and was cost-effective when used to reduce the frequency and cost of thiopurine blood monitoring for patients without risk variants.

conclusionWe recommend TPMT and NUDT15 genetic testing in patients of Asian and admixed ancestry. In Europeans, reflex NUDT15 testing should be considered in patients with reduced TPMT activity or loss-of-function genotype. Thiopurines should be avoided in patients with > 1 NUDT15 variant allele and in patients with both NUDT15 and TPMT variant alleles. In patients with a single NUDT15 variant allele, we recommend thiopurine dose reduction (< 1 mg/kg/day) and intensified blood test monitoring.

Indexed as

AzathioprineInflammatory Bowel DiseasesMercaptopurinePharmacogenomic TestingPyrophosphatasesAdultCase-Control StudiesCohort StudiesCost-Benefit AnalysisFemaleGenotypeHumansMaleMiddle AgedNudix HydrolasesPhenotypeAzathioprineMercaptopurineNudix HydrolasesNUDT15 protein, humanPyrophosphatasescost‐effectivenessexpressivityinflammatory bowel diseasemyelosuppressionNUDT15penetrancepharmacogenetic testingvariant pathogenicity

Identifiers

PMID40548539
PMCPMC12395891

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.