Evidence map›Paper›PMID 40547453›Full record

ArticleComputational and structural biotechnology journal2025

Investigating and evaluating potential antigen binding sites for monoclonal anti-HER2 antibodies: The LightDock approach.

Emil Stefańczyk, Agata Mitura, Marta Utratna, Magdalena Staniszewska

Abstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. AlphaFold in protein structure and function prediction.Computational and structural biotechnology journal · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Emil StefańczykSDS Optic, EcoTech Complex, Block A, Głęboka 39, Lublin 20-612, Poland.
Agata MituraSDS Optic, EcoTech Complex, Block A, Głęboka 39, Lublin 20-612, Poland.
Marta UtratnaFibiomed, EcoTech Complex, Block A, Głęboka 39, Lublin 20-612, Poland.
Magdalena StaniszewskaSDS Optic, EcoTech Complex, Block A, Głęboka 39, Lublin 20-612, Poland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Monoclonal antibodies targeting HER2, a receptor overexpressed in certain cancer cells, have greatly improved the treatment of HER2-positive cancers. In addition, anti-HER2 antibodies play a critical role in diagnostic applications, enabling accurate detection of HER2 expression levels. Advancing antibody-based therapies and diagnostic tools require a thorough understanding of binding interactions, but it remains challenging due to complex antibody protein structure and its flexibility, particularly within their complementarity-determining regions. In this study we utilized LightDock, a molecular docking tool simulating protein-protein interactions which can incorporate flexibility that allows the

Indexed as

Antigen-antibody interactionsCancer diagnosticsin silico analysisMolecular docking

Identifiers

PMID40547453
PMCPMC12182776

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.