Evidence map›Paper›PMID 40545552›Full record

ReviewThe Plant journal : for cell and molecular biology2025

From data to discovery: leveraging big data in plant natural products biosynthesis research.

Matthew McConnachie, Tuan-Anh Minh Nguyen, Truc Kim, Trinh-Don Nguyen, Thu-Thuy T Dang

Abstract readReview
In one paragraph

Review in The Plant journal : for cell and molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Matthew McConnachie *Department of Chemistry, Irving K. Barber Faculty of Science, University of British Columbia, Kelowna, British Columbia, V1V 1V7, Canada.
Tuan-Anh Minh Nguyen *Department of Chemistry, Irving K. Barber Faculty of Science, University of British Columbia, Kelowna, British Columbia, V1V 1V7, Canada.
Truc KimDepartment of Chemistry, Irving K. Barber Faculty of Science, University of British Columbia, Kelowna, British Columbia, V1V 1V7, Canada.ORCID 0000-0003-1650-4169
Trinh-Don NguyenDepartment of Chemistry, Irving K. Barber Faculty of Science, University of British Columbia, Kelowna, British Columbia, V1V 1V7, Canada.
Thu-Thuy T DangDepartment of Chemistry, Irving K. Barber Faculty of Science, University of British Columbia, Kelowna, British Columbia, V1V 1V7, Canada.ORCID 0000-0002-6459-3664

Funding

Michael Smith Health Research BC SCH-2020-0401Micheal Smith Foundation Supplementary ScholarshipNatural Sciences and Engineering Research Council of Canada ALLRP 580347-22Stober Foundation
6 · The paper itself

Abstract

Plant natural products or specialized metabolites play a vital role in drug discovery and development, with many clinically important derivatives such as the anticancer drugs topotecan (derived from the natural alkaloid camptothecin) and etoposide (derived from the natural polyphenol podophyllotoxin). Remarkable advances in understanding plant natural product metabolism have been achieved at an unprecedented pace over the past 15 years. The integration of high-throughput technologies in genomics, transcriptomics, and metabolomics has generated vast datasets that provide a more comprehensive understanding of plant metabolism. Additionally, advances in computational tools, machine learning, and data analytics have played a crucial role in processing and interpreting the massive amounts of newly available data, enabling researchers to uncover intricate regulatory networks and identify key components of biosynthetic pathways. This review navigates the evolving landscape of plant biosynthetic pathway elucidation accelerated by innovative multidisciplinary strategies that capitalize on big data. We highlight recent advances in plant-specialized biosynthesis that illustrate how big data are increasingly leveraged to unravel the complexities of plant metabolism.

Indexed as

Big DataBiological ProductsPlantsBiosynthetic PathwaysDrug DiscoveryGenomicsMetabolomicsBiological Productsartificial intelligencebig datamultiomicsnatural product biosynthesisplant

Identifiers

PMID40545552
PMCPMC12183336

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.