ArticleMicrobiome2025
Wild wisdom meets cultivation: comparative rhizomicrobiome analysis unveils the key role of Paraburkholderia in growth promotion and disease suppression in Coptis chinensis.
Article in Microbiome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- From Traditional to Omics-Driven: Emerging Strategies for Isolation, Cultivation, and Identification of Plant Endophytes.Plants (Basel, Switzerland) · 2026Review
- Research Progress on Rhizosphere Microbiota for Controlling Soil-Borne Diseases: Mechanisms, Applications, and Challenges.Microorganisms · 2026Review
- Comparative analysis of soil microbial diversity and chemical properties in different Phallus dongsun habitats.Scientific reports · 2026Article
- Soil acidification dismantles a citrulline-mediated microbe-metabolite-host defense axis in watermelon, exacerbating Fusarium wilt.NPJ biofilms and microbiomes · 2026Article
- Effects of reductive soil disinfestation on the composition of the soil microbial community in degraded facility cucumber.Microbiology spectrum · 2026Article
- Comparative analysis of rhizobacterial communities across five medicinal plants in Xinjiang.Frontiers in microbiology · 2026Article
- A novel internal reference microorganism-based method reveals wild-enrichedFrontiers in microbiology · 2026Article
- Altitudinal changes induce responses inFrontiers in plant science · 2026Article
- Comparative analysis of the seed microbiome in four major oilseed crops (rapeseed, sunflower, soybean, sesame) reveals host-specific assembly and potential application of seed core microbes.Frontiers in plant science · 2026Article
- Root triterpenoid metabolites drive the assembly and feedback regulation of the rhizosphere microbiome during flowering to senescence inFrontiers in microbiology · 2026Article
- Quality comparison of Gastrodia elata grown using artificial mushroom cultivation kits and traditional wood-based cultivation.Scientific reports · 2025Article
- Insights into microbiome-triterpenoid correlation inFrontiers in microbiology · 2025Article
- Comparative analysis of rhizosphere microbial communities and secondary metabolites in cultivatedFrontiers in plant science · 2025Article
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11 authors.
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Abstract
backgroundThe sustained monoculture and irregular planting practices rendered the cultivated Coptis chinensis more prone to various diseases compared to its wild counterparts. Rewilding the rhizomicrobiome of cultivated plants has emerged as a promising strategy to promote plant growth, but ancestral microbiota suitable for C. chinensis remain largely uncharted.
resultsThe amplicon data analyses revealed that habitat transition strongly influenced the rhizosphere microbial communities. The rhizomicrobiomes of wild C. chinensis encompassed a more diverse array of ecological groups and exhibited a greater functional diversity compared to their cultivated counterparts. A higher proportion of beneficial fungi was observed in the rhizosphere of wild C. chinensis, while the cultivated plants had a higher population of pathogenic fungi. Furthermore, a well-documented plant-growth-promoting rhizobacterium genus, Paraburkholderia, was found to play an essential role in the resistance of the wild C. chinensis to potential disease caused by Ilyonectria. Two strains of Paraburkholderia (Paraburkholderia nemoris and Paraburkholderia phytofirmans) were isolated, and in vitro experiments confirmed that these isolates possess various growth-promoting properties and antagonistic activities against known pathogens for C. chinensis root rot. Both of the Paraburkholderia isolates could markedly promote the plant immune response and enhance the overall health of the cultivated C. chinensis.
conclusionsBy a comprehensive comparison of the rhizosphere microbiome between wild and cultivated C. chinensis, the promising bacterial genus Paraburkholderia was identified as a beneficial microbe significantly promoting the growth of C. chinensis, providing pivotal insights for future endeavors aimed at engineering the rhizosphere microbiome of C. chinensis, as well as other medicinal herbs. Video Abstract.
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