Evidence map›Paper›PMID 40543886›Full record

ArticleToxicology2025

Assessing the impact of in vitro xenobiotic metabolism on estrogenic chemical bioactivity in high-throughput profiling assays.

Amanda Jurgelewicz, Kristen Breaux, Clinton M Willis, Felix R Harris, Gabrielle Byrd, Joshua Witten, Derik E Haggard, Chad Deisenroth, Joshua A Harrill

Abstract read
In one paragraph

Article in Toxicology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Amanda JurgelewiczCenter for Computational Toxicology and Exposure (CCTE), Office of Research and Development (ORD), US EPA, 109 TW Alexander Dr., Durham, NC 27709, United States; Oak Ridge Institute of Science and Education (ORISE), 1299 Bethel Valley Rd, Oak Ridge, TN 37830, United States. Electronic address: jurgelewicz.amanda@epa.gov.
Kristen BreauxCenter for Computational Toxicology and Exposure (CCTE), Office of Research and Development (ORD), US EPA, 109 TW Alexander Dr., Durham, NC 27709, United States. Electronic address: breaux.kristen@epa.gov.
Clinton M WillisCenter for Computational Toxicology and Exposure (CCTE), Office of Research and Development (ORD), US EPA, 109 TW Alexander Dr., Durham, NC 27709, United States. Electronic address: willis.clinton@epa.gov.
Felix R HarrisCenter for Computational Toxicology and Exposure (CCTE), Office of Research and Development (ORD), US EPA, 109 TW Alexander Dr., Durham, NC 27709, United States; Oak Ridge Institute of Science and Education (ORISE), 1299 Bethel Valley Rd, Oak Ridge, TN 37830, United States. Electronic address: harris.felix@epa.gov.
Gabrielle ByrdCenter for Computational Toxicology and Exposure (CCTE), Office of Research and Development (ORD), US EPA, 109 TW Alexander Dr., Durham, NC 27709, United States; Oak Ridge Institute of Science and Education (ORISE), 1299 Bethel Valley Rd, Oak Ridge, TN 37830, United States. Electronic address: byrd.gabrielle@epa.gov.
Joshua WittenCenter for Computational Toxicology and Exposure (CCTE), Office of Research and Development (ORD), US EPA, 109 TW Alexander Dr., Durham, NC 27709, United States; Oak Ridge Associated Universities (ORAU), 100 ORAU Way, Oak Ridge, TN 37830, United States. Electronic address: witten.joshua@epa.gov.
Derik E HaggardCenter for Computational Toxicology and Exposure (CCTE), Office of Research and Development (ORD), US EPA, 109 TW Alexander Dr., Durham, NC 27709, United States. Electronic address: haggard.derik@epa.gov.
Chad DeisenrothCenter for Computational Toxicology and Exposure (CCTE), Office of Research and Development (ORD), US EPA, 109 TW Alexander Dr., Durham, NC 27709, United States. Electronic address: deisenroth.chad@epa.gov.
Joshua A HarrillCenter for Computational Toxicology and Exposure (CCTE), Office of Research and Development (ORD), US EPA, 109 TW Alexander Dr., Durham, NC 27709, United States. Electronic address: harrill.joshua@epa.gov.

Funding

Intramural EPA EPA999999
6 · The paper itself

Abstract

High-throughput profiling assays such as high-throughput phenotypic profiling (HTPP) with Cell Painting and high-throughput transcriptomics (HTTr) are new approach methods that have been used to characterize the bioactivity and potential hazards of chemicals. To enhance the ability to identify potential in vivo hazards during chemical screening, we previously coupled both assays to an in vitro metabolism platform, Alginate Immobilization of Metabolic Enzymes (AIME). In this study, we used the AIME platform to expand upon our previous results for three estrogenic reference chemicals by screening an additional 40 chemicals anticipated to have varied activity and/or shifts in activity with metabolism in an estrogen receptor transactivation assay (ERTA) in VM7Luc4E2 breast carcinoma cells. The results demonstrated that HTTr could detect estrogen receptor (ER) activation and identify chemicals with metabolism-induced shifts in estrogenicity via ER gene signature enrichment analysis. Additionally, HTPP could detect cases where metabolism impacted chemical cytotoxicity and cases where metabolites generated by AIME produced distinct bioactivity profiles compared to their respective parent compounds. Notably, our findings highlighted examples of chemicals that had very different phenotypic and gene expression profiles between metabolic conditions that would not be observed in traditional chemical screening in most immortalized cell line models. Incorporation of metabolism using the AIME platform into high-throughput profiling assays could help inform next generation risk assessment by providing more comprehensive hazard characterizations.

Indexed as

EstrogensHigh-Throughput Screening AssaysXenobioticsCell Line, TumorFemaleGene Expression ProfilingHumansReceptors, EstrogenEstrogensReceptors, EstrogenXenobioticsCell PaintingEstrogen ReceptorHigh-Throughput Phenotypic ProfilingHigh-Throughput TranscriptomicsNew Approach MethodsXenobiotic Metabolism

Identifiers

PMID40543886
PMCPMC12890080

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.