Evidence map›Paper›PMID 40542816›Full record

ArticleBriefings in bioinformatics2025

Genetic regulation of lncRNA expression in whole human brain and their contribution to CNS disorders.

Yijie He, Yaqin Tang, Pengcheng Tan, Dongyu Huang, Yongheng Wang, Tong Wen, Lin Huang, Jia Wang, Lizhen Shao, Qinyu Cai and 4 more

Abstract read
In one paragraph

Article in Briefings in bioinformatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Identifying Alzheimer's disease-related pathways based on whole-genome sequencing data.Computational and structural biotechnology journal · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Yijie HeDepartment of Bioinformatics, School of Basic Medicine, Chongqing Medical University, 400016, Chongqing, China.
Yaqin TangDepartment of Bioinformatics, School of Basic Medicine, Chongqing Medical University, 400016, Chongqing, China.
Pengcheng TanDepartment of Bioinformatics, School of Basic Medicine, Chongqing Medical University, 400016, Chongqing, China.
Dongyu HuangDepartment of Bioinformatics, School of Basic Medicine, Chongqing Medical University, 400016, Chongqing, China.
Yongheng WangDepartment of Bioinformatics, School of Basic Medicine, Chongqing Medical University, 400016, Chongqing, China.
Tong WenDepartment of Bioinformatics, School of Basic Medicine, Chongqing Medical University, 400016, Chongqing, China.
Lin HuangDepartment of Bioinformatics, School of Basic Medicine, Chongqing Medical University, 400016, Chongqing, China.
Jia WangDepartment of Bioinformatics, School of Basic Medicine, Chongqing Medical University, 400016, Chongqing, China.
Lizhen ShaoDepartment of Bioinformatics, School of Basic Medicine, Chongqing Medical University, 400016, Chongqing, China.
Qinyu CaiKey Laboratory of Major Brain Disease and Aging Research (Ministry of Education), Chongqing Medical University, 400016, Chongqing, China.
Zhimou LiDepartment of Bioinformatics, School of Basic Medicine, Chongqing Medical University, 400016, Chongqing, China.
Yueyang WangDepartment of Bioinformatics, School of Basic Medicine, Chongqing Medical University, 400016, Chongqing, China.
Taihang LiuDepartment of Bioinformatics, School of Basic Medicine, Chongqing Medical University, 400016, Chongqing, China.
Zhijie HanDepartment of Bioinformatics, School of Basic Medicine, Chongqing Medical University, 400016, Chongqing, China.

Funding

CQMU Program for Youth Innovation in Future Medicine, Chongqing Medical University W0147Science and Technology Research Program of National Natural Science Foundation of China 32200446
6 · The paper itself

Abstract

Long non-coding RNAs (lncRNAs) play a key role in the human brain, and genetic variants regulate their expression. Herein, expression quantitative trait loci of lncRNAs encompassing 10 brain regions from 134 individuals were analyzed, and novel variants influencing lncRNA expression (eSNPs) and respective affected lncRNAs (elncRNAs) were identified. The eSNPs showed proximity to their corresponding elncRNAs, enriched in the non-coding genome, and have a high minor allele frequency. The elncRNAs exhibit a high-level and complex pattern of expression. The genetic regulation is more tissue specific for lncRNAs than for protein-coding genes, with notable differences between cerebrum and cerebellum. Nonetheless, it shows relatively similar patterns across cortex regions. Furthermore, we observed a significant enrichment of eSNPs among variants associated with neurological disorders, especially insomnia, and identified insomnia-related lncRNAs involved in immune response functions. Moreover, the present study offers an improved tool for lncRNA quantification, a novel approach for lncRNA function analysis, and a database of lncRNA expression regulation in human brain. These findings and resources will advance the research on non-coding gene expression regulation in neuroscience.

Indexed as

BrainCentral Nervous System DiseasesGene Expression RegulationRNA, Long NoncodingHumansPolymorphism, Single NucleotideQuantitative Trait LociRNA, Long Noncodingcentral nervous system disordersexpression quantitative trait locifunctional analysishuman brainlong non-coding RNAs

Identifiers

PMID40542816
PMCPMC12205935

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.