Evidence map›Paper›PMID 40542721›Full record

ArticleG3 (Bethesda, Md.)2025

Five new Caenorhabditis species from Indonesia provide exceptions to Haldane's rule and partial fertility of interspecific hybrids.

Mia Prastika Devi, Elkana Haryoso, Emha Ilhami Rais, Anggik Karuniawan, Minhajul Qowim Yahya, Aurélien Richaud, John Wang, Matthew V Rockman, Hagus Tarno, Marie-Anne Félix

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. T2T genomes ofGenome research · 2026
    Article
  2. Fertility reversibly modulatesbioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Mia Prastika DeviDepartment of Pests and Disease, Faculty of Agriculture, University of Brawijaya, JL Veteran Malang, Malang, East Java 65145, Indonesia.
Elkana HaryosoDepartment of Pests and Disease, Faculty of Agriculture, University of Brawijaya, JL Veteran Malang, Malang, East Java 65145, Indonesia.
Emha Ilhami RaisDepartment of Pests and Disease, Faculty of Agriculture, University of Brawijaya, JL Veteran Malang, Malang, East Java 65145, Indonesia.
Anggik KaruniawanDepartment of Pests and Disease, Faculty of Agriculture, University of Brawijaya, JL Veteran Malang, Malang, East Java 65145, Indonesia.
Minhajul Qowim YahyaDepartment of Pests and Disease, Faculty of Agriculture, University of Brawijaya, JL Veteran Malang, Malang, East Java 65145, Indonesia.
Aurélien RichaudInstitut de Biologie de l'École Normale Supérieure, Centre National de la Recherche Scientifique, Institut National de la Santé et de la Recherche Médicale, École Normale Supérieure, Paris Sciences et Lettres, 46 rue d'Ulm Paris 75005, France.
John WangBiodiversity Research Center, Academia Sinica, Taipei 115, Taiwan.ORCID 0000-0002-6179-775X
Matthew V RockmanDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.ORCID 0000-0001-6492-8906
Hagus TarnoDepartment of Pests and Disease, Faculty of Agriculture, University of Brawijaya, JL Veteran Malang, Malang, East Java 65145, Indonesia.ORCID 0000-0003-0997-5843
Marie-Anne FélixInstitut de Biologie de l'École Normale Supérieure, Centre National de la Recherche Scientifique, Institut National de la Santé et de la Recherche Médicale, École Normale Supérieure, Paris Sciences et Lettres, 46 rue d'Ulm Paris 75005, France.

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Evolutionary Genetics of Animal DevelopmentR35GM141906 · NIGMS · NEW YORK UNIVERSITY · PI Matthew Rockman · 2021 to 2026
$2.6M
Centre National de la Recherche Scientifique (France)NIGMS NIH HHS R35 GM141906NIH HHS P40 OD010440United States National Institute of General Medical Sciences GM141906Universitas Brawijaya (Indonesia)
6 · The paper itself

Abstract

Given the interest in the biogeography and diversity of the Caenorhabditis genus, we established a collection of these nematodes from field surveys on 4 Indonesian islands. We isolated over 60 Caenorhabditis strains belonging to 10 species. Five species were previously known from other locations: Caenorhabditis briggsae, which was predominant, Caenorhabditis tropicalis, Caenorhabditis nigoni, Caenorhabditis brenneri, and Caenorhabditis elegans. The 5 other species are new discoveries for science, and we describe them here as Caenorhabditis indonesiana, Caenorhabditis malinoi, Caenorhabditis ceno, Caenorhabditis brawijaya, and Caenorhabditis ubi. RNA sequence analysis of 1,861 orthologous genes placed all species from Indonesia in the Elegans group of Caenorhabditis species. Four of the new species belong to a Sinica subclade of species so far only found in an East Asia-Indo-Pacific world region. The fifth new species, C. indonesiana, appears as the sister of the C. tropicalis-Caenorhabditis wallacei pair, both also found in Indonesia. The present findings are thus consistent with diversification in the Elegans group having occurred in this world region. Crosses between closely related species showed counterexamples to Haldane's "rule": for several pairs of species, in one cross direction, we only found hybrid males. In addition, we found a pair of species that could partially interbreed: C. ubi (East Java) with C. sp. 41 (Solomon islands), with the hybrid males in one cross direction being fertile. Such closely related species pairs are good models for genetic studies of incompatibilities arising during speciation.

Indexed as

CaenorhabditisFertilityHybridization, GeneticAnimalsFemaleIndonesiaMalePhylogenyAnimaliabiodiversityCaenorhabditisHaldane's ruleIndonesianematodespeciationWormBase

Identifiers

PMID40542721
PMCPMC12341892

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.