Evidence map›Paper›PMID 40542664›Full record

ArticleClinical genetics2025

PIK3C2A-Related Clinical Phenotype and Cellular Charaterization Linked to Functional SHH Primary Cilia Defect.

Adella Karam, Clarisse Delvallée, Bénédicte Gérard, Elodie Javey, Pascal Kessler, Valérie Pelletier, Jean-Baptiste Lamouche, Nicolas Le May, Jean Muller, Hélène Dollfus

Abstract read
In one paragraph

Article in Clinical genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Adella KaramLaboratoire de Génétique médicale, UMR_S INSERM U1112, Institut de Génétique Médicale D'alsace (IGMA), Université de Strasbourg, Strasbourg, France.
Clarisse DelvalléeLaboratoire de Génétique médicale, UMR_S INSERM U1112, Institut de Génétique Médicale D'alsace (IGMA), Université de Strasbourg, Strasbourg, France.
Bénédicte GérardLaboratoires de Diagnostic Génétique, Hôpitaux Universitaires de Strasbourg, Strasbourg, France.
Elodie JaveyLaboratoires de Diagnostic Génétique, Hôpitaux Universitaires de Strasbourg, Strasbourg, France.ORCID 0000-0001-6258-8741
Pascal KesslerUniversité de Strasbourg, Inserm UMS 38, Centre de Recherche en Biomédecine de Strasbourg, Faculté de Médecine, Strasbourg, France.
Valérie PelletierCentre de Référence Pour les Affections Rares en génétique Ophtalmologique, CRMR CARGO, Filière SENSGENE (FSMR), Hôpitaux Universitaires de Strasbourg, Strasbourg, France.
Jean-Baptiste LamoucheUnité Fonctionnelle de Bioinformatique Médicale appliquée Au Diagnostic (UF7363), Hôpitaux Universitaires de Strasbourg, Strasbourg, France.
Nicolas Le MayLaboratoire de Génétique médicale, UMR_S INSERM U1112, Institut de Génétique Médicale D'alsace (IGMA), Université de Strasbourg, Strasbourg, France.
Jean MullerLaboratoire de Génétique médicale, UMR_S INSERM U1112, Institut de Génétique Médicale D'alsace (IGMA), Université de Strasbourg, Strasbourg, France.ORCID 0000-0002-7682-559X
Hélène DollfusLaboratoire de Génétique médicale, UMR_S INSERM U1112, Institut de Génétique Médicale D'alsace (IGMA), Université de Strasbourg, Strasbourg, France.

Funding

Agence de la BiomédecineUniversité de Strasbourg
6 · The paper itself

Abstract

PIK3C2A is a member of the class II phosphatidylinositol-3-kinases (PI3K) family that catalyzes the phosphorylation of phosphatidylinositol (PI) into PI(3)P and of PI(4)P into PI(3,4)P2. These second messenger lipids regulate a wide range of downstream signaling pathways involved in many physiological functions and cellular processes, including cell proliferation, growth, survival, motility, and metabolism. PIK3C2A is also involved in the regulation of primary cilia formation and maintenance and in the regulation of receptor-mediated endocytosis at the base of the cilium. PIK3C2A was recently related to a novel oculoskeletodental syndrome (OCSKD MIM#618440), combining short stature, coarse facial features, ocular, and skeletal abnormalities. We describe here the fifth family presenting a PIK3C2A-related syndrome characterized by pulverulent cataracts and deafness. Using trio exome sequencing, we identified two novel compound heterozygous variants in PIK3C2A for which functional testing was necessary to assess the effect of one of the variants. Cellular studies of patient's-derived skin fibroblasts revealed a normal PIK3C2A protein level but a defective enzyme. Ciliary and cellular phenotype studies showed in the patient's cells impaired cilia formation and function as well as a reduced proliferative capacity. This study expands the clinical and mutational spectrum of PIK3C2A-related syndrome.

Indexed as

Abnormalities, MultipleEye DiseasesMusculoskeletal DiseasesPhosphatidylinositol 3-KinasesCell ProliferationCiliaFemaleGenes, RecessiveGenetic VariationHumansMalePedigreePhosphatidylinositolsPhosphatidylinositol 3-KinasesPhosphatidylinositolsPIK3C2A protein, humanPIK3C2API metabolism disordersprimary ciliumsonic hedgehog pathway

Identifiers

PMID40542664
PMCPMC12580486

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.