Evidence map›Paper›PMID 40540647›Full record

ArticleThe Journal of urology2025

Can Genomic Classifiers in Biopsy Cores With Grade Group 1 Cancer Predict Higher-Grade Disease Elsewhere in the Prostate? Results From the Prospective Miami Active Surveillance Trial.

Pedro F S Freitas, Archan Khandekar, Joao G Porto, Hui Yu, Adam D Williams, Yuval Avda, Ankur Malpani, Tarek Ajami, Dinno F Mendiola, Nachiketh Soodana-Prakash and 18 more

Abstract read
In one paragraph

Article in The Journal of urology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors.

Pedro F S FreitasDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.ORCID 0000-0003-4497-3923
Archan KhandekarDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Joao G PortoDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.ORCID 0000-0002-6495-1054
Hui YuDepartment of Public Health Sciences, Sylvester Comprehensive Cancer Center, Miami, Florida.ORCID 0000-0002-4491-8855
Adam D WilliamsDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Yuval AvdaDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Ankur MalpaniDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Tarek AjamiDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Dinno F MendiolaDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Nachiketh Soodana-PrakashDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Sanjaya SwainDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Sandra GastonDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Oleksandr N KryvenkoDepartment of Pathology and Laboratory Medicine, University of Miami Miller School of Medicine, Miami, Florida.ORCID 0000-0001-5731-1748
Elai DavicioniVeracyte, Inc, South San Francisco, California.
Mohammed AlshalalfaVeracyte, Inc, South San Francisco, California.
Yangyang HaoVeracyte, Inc, South San Francisco, California.
Brandon MahalDepartment of Radiation Oncology, University of Miami Miller School of Medicine, Miami, Florida.
Elena CortizasDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Zoe SzczotkaDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Timothy GuerardDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Bruce KavaDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Radka StoyanovaDepartment of Radiation Oncology, University of Miami Miller School of Medicine, Miami, Florida.
Chad R RitchDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Bruno NaharDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Mark L GonzalgoDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Alan PollackDepartment of Radiation Oncology, University of Miami Miller School of Medicine, Miami, Florida.
Dipen J ParekhDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.
Sanoj PunnenDesai Sethi Urology Institute, University of Miami Miller School of Medicine, Miami, Florida.

Funding

Tumor Biology Research ProgramP30CA240139 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI George S. Grills · 2019 to 2026
$24.1M
UM Calabresi Clinical Oncology Research Career Development AwardK12CA226330 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Alan Pollack · 2018 to 2026
$5.1M
MRI Imaging and Biomarkers for Early Detection of Aggressive Prostate CancerU01CA239141 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI POLLACK, ALAN, PUNNEN, SANOJ · 2019 to 2023
$3.0M
The Rigor and Clinical Utility of PSMA Enriched Extracellular Vesicles for Prostate Cancer DetectionR01CA272766 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SANDRA M GASTON, Alan Pollack · 2023 to 2026
$1.9M
Prostate Needle Biopsies: Impact of Preanalytical Procurement and Processing Variables on the Detection of Gene Expression Signatures of Prostate Cancer AggressivenessU01CA271400 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SANDRA M GASTON, Alan Pollack · 2022 to 2026
$1.7M
NCI NIH HHS K12 CA226330NCI NIH HHS P30 CA240139NCI NIH HHS R01 CA272766NCI NIH HHS U01 CA239141NCI NIH HHS U01 CA271400
6 · The paper itself

Abstract

purposeWe investigated whether expression signatures from Grade Group (GG) 1 biopsy cores can detect the presence of higher-grade cancer elsewhere in the prostate. MATERIALS AND

methodsWe enrolled 205 men with low to favorable intermediate-risk prostate cancer undergoing active surveillance on a prospective protocol. All participants underwent MRI and confirmatory biopsy at enrollment, followed by annual biopsies for 3 more years. Select cores were sent for Decipher Prostate Genomic Classifier (DGC) testing, and derived Oncotype DX Genomic Prostate Score (dGPS) and Prolaris Cell Cycle Progression (dCCP) signatures were obtained. We compared genomic scores from GG1 biopsy cores with vs without coexisting GG2 and GG3 or higher cancer (GG2+ and GG3+, respectively). We repeated this comparison using only the highest-volume GG1 core from each biopsy, which is the current standard of care.

resultsGenomic profiling was successful in 141 of 205 patients (324 GG1 cores). There were no significant differences in DGC, dCCP, or dGPS scores between GG1 cores with vs without coexisting GG2+ cancer elsewhere. This remained true when using the largest volume GG1 core from each biopsy. dGPS was higher among GG1 cores with coexisting GG3+ cancer compared with those without (0.24 vs 0.10,

conclusionsGenomic classifiers in GG1 cores did not predict coexisting GG2+ cancer, while dGPS signatures showed some promise in detecting GG3+ cancer elsewhere in the gland. None of the signatures showed a difference between groups when using the highest volume GG1 core, which is the standard practice for genomic classifiers.

Indexed as

ProstateProstatic NeoplasmsAgedBiopsy, Large-Core NeedleGenomicsHumansMaleMiddle AgedNeoplasm GradingProspective StudiesWatchful Waitingactive surveillanceDeciphergenomic classifiersgenomicsprostate cancer

Identifiers

PMID40540647
PMCPMC12351652

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.