Evidence map›Paper›PMID 40540513›Full record

ArticlePloS one2025

Proliferation and regeneration of the healthy human urothelium: A multi-scale simulation approach with 16 hypotheses of cell differentiation.

Fabian Siegel, Angelo Torelli, Minca Mattis, Julian Debatin, Philipp Erben, Markus Gumbel

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Fabian SiegelDepartment of Biomedical Informatics, Medical Faculty Mannheim at the University of Heidelberg, Mannheim, Germany.ORCID 0000-0002-9673-5030
Angelo TorelliCompetence Center for Algorithmic and Mathematical Methods in Biology, Biotechnology and Medicine, Mannheim University of Applied Sciences, Mannheim, Germany.ORCID 0000-0001-5638-8719
Minca MattisClinic of Urology and Urosurgery, Medical Faculty Mannheim at the University of Heidelberg, Mannheim, Germany.
Julian DebatinDepartment of Biomedical Informatics, Medical Faculty Mannheim at the University of Heidelberg, Mannheim, Germany.
Philipp ErbenClinic of Urology and Urosurgery, Medical Faculty Mannheim at the University of Heidelberg, Mannheim, Germany.ORCID 0000-0002-8279-7636
Markus GumbelCompetence Center for Algorithmic and Mathematical Methods in Biology, Biotechnology and Medicine, Mannheim University of Applied Sciences, Mannheim, Germany.ORCID 0000-0001-7657-9678

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The urothelium as a stratified epithelium of the urinary tract is a slow regenerating tissue of different layers and shares similarities with the epidermis. Characteristics of its cell types, regeneration, tissue homeostasis, integrity and self organization are only partly understood. Precise computer-based models which investigate the cell kinetics of the urothelium from a theoretical perspective are beneficial for the regenerative medicine field and cancer research. Here an agent-based computer simulation based on the Glazier-Graner-Hogeweg (GGH) approach were developed and tested on 16 hypotheses of proliferation and differentiation mechanisms of the healthy urothelial tissue in steady state and tissue regeneration. A fitness-function was introduced for the quantitative comparison of respective models. The findings indicate that two similar hypotheses with the following features describe the healthy tissue best: 1) Progenitor cells either divide and differentiate in a stem cell fashion or proliferate according to the population asymmetry model in epidermis, 2) Basal cells divide symmetrically and differentiate into intermediate cells depending on contact to the basal membrane. 3) Intermediate cells do not proliferate but differentiate into umbrella cells when they are in contact with the medium.

Indexed as

Cell DifferentiationCell ProliferationModels, BiologicalRegenerationUrotheliumComputer SimulationHumansStem Cells

Identifiers

PMID40540513
PMCPMC12180641

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.