Evidence map›Paper›PMID 40540243›Full record

ArticleThe Journal of cell biology2025

ALDH9A1 deficiency as a source of endogenous DNA damage that requires repair by the Fanconi anemia pathway.

Moonjung Jung, Jungwoo Kim, Yeji Park, Isaac Ilyashov, Fan Yang, Haruna B Choijilsuren, Danielle Keahi, Jordan A Durmaz, Habin Bea, Audrey M Goldfarb and 11 more

Abstract read
In one paragraph

Article in The Journal of cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Fanconi Anemia as a Window into Premalignant Field Cancerization of the Oral Mucosa.medRxiv : the preprint server for health sciences · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. G-quadruplexes as a source of vulnerability in BRCA2Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Moonjung Jung *Laboratory of Genome Maintenance, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-1364-1814
Jungwoo Kim *Division of Hematology, Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0001-8877-6556
Yeji ParkDivision of Hematology, Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0009-0008-8723-0234
Isaac IlyashovLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, USA.ORCID 0009-0006-1796-7172
Fan YangDivision of Hematology, Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0009-0000-1954-4110
Haruna B ChoijilsurenDivision of Hematology, Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0002-7599-6207
Danielle KeahiLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, USA.ORCID 0009-0007-4545-1429
Jordan A DurmazDivision of Hematology, Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0009-0001-1628-5384
Habin BeaDivision of Hematology, Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0009-0002-4369-3970
Audrey M GoldfarbLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, USA.ORCID 0009-0004-3507-8892
Mia D SteinLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, USA.ORCID 0009-0006-2927-5616
Claudia WongDepartment of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA.ORCID 0009-0000-8353-1381
Ryan R WhiteLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, USA.ORCID 0000-0001-8344-2549
Sunandini SridharLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-6991-1860
Raymond NoonanLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-7354-8486
Tom F WileyLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-4775-6556
Thomas S CarrollThe Bioinformatics Resource Center, The Rockefeller University , New York, NY, USA.ORCID 0000-0002-0073-1714
Francis P LachLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, USA.ORCID 0000-0003-3708-7122
Sangmoo JeongSidney Kimmel Comprehensive Cancer Research Center, Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0001-9428-6668
Ileana C MirandaLaboratory of Comparative Pathology, Memorial Sloan Kettering Cancer Center, Weill Cornell Medical College, and The Rockefeller University, New York, NY, USA.ORCID 0000-0003-3168-0515
Agata SmogorzewskaLaboratory of Genome Maintenance, The Rockefeller University, New York, NY, USA.ORCID 0000-0001-6285-1562

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI ALAN KEITH MEEKER · 1985 to 2026
$208.6M
Developing, Demonstrating, and Disseminating Innovative Programs to Achieve Translational SuccessUL1TR001866 · NCATS · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY, KRUEGER, JAMES G · 2016 to 2025
$40.6M
Metabolic regulation of exosome biogenesisR35GM147513 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Sangmoo Jeong · 2022 to 2026
$2.3M
The role of nucleases in interstrand crosslink repairR01HL120922 · NHLBI · ROCKEFELLER UNIVERSITY · PI SMOGORZEWSKA, AGATA · 2014 to 2018
$2.1M
Functions of human RAD51 and its paralogs during DNA interstrand crosslink repairR01CA204127 · NCI · ROCKEFELLER UNIVERSITY · PI SMOGORZEWSKA, AGATA · 2017 to 2021
$2.0M
Novel sources of endogenous DNA damage in hematopoietic stem progenitor cellsK99HL150628 · NHLBI · ROCKEFELLER UNIVERSITY · PI JUNG, MOONJUNG · 2020 to 2024
$1.2M
Hyperpolarized Micro-NMR for Quantitative Analysis of Metabolism in Leukemia Stem CellsR00CA226357 · NCI · JOHNS HOPKINS UNIVERSITY · PI JEONG, SANGMOO · 2021 to 2023
$747k
Understanding the aging process in hematopoietic stem cells by alcohol-induced DNA damageR21AA030864 · NIAAA · JOHNS HOPKINS UNIVERSITY · PI JUNG, MOONJUNG · 2023 to 2024
$430k
Hyperpolarized Micro-NMR for Quantitative Analysis of Metabolism in Leukemia Stem CellsK99CA226357 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI JEONG, SANGMOO · 2018 to 2019
$255k
Cytek Aurora full spectrum flow cytometric analyzerS10OD026859 · OD · JOHNS HOPKINS UNIVERSITY · PI WANG, ZACK Z. · 2019 to 2019
$242k
THE ROLE OF FAN1 NUCLEASE IN KIDNEY AND DIGESTIVE SYSTEM HEALTH AND FUNCTIONF32DK115144 · NIDDK · ROCKEFELLER UNIVERSITY · PI WHITE, RYAN RICHARD · 2017 to 2019
$168k
American Society of HematologyCigarette Restitution Fund Recruitment Award PHPA-2288/M00B4600138Korea Health Industry Development InstituteMaryland Stem Cell Research Fund 2023-MSCRFL-5999Maryland Stem Cell Research Fund 2023-MSCRFL-6109Ministry of Health & Welfare, Republic of Korea HI21C0946NCATS NIH HHS UL1 TR001866NCI NIH HHS K99 CA226357NCI NIH HHS P30 CA006973NCI NIH HHS P30 CA008748NCI NIH HHS R00 CA226357NCI NIH HHS R01 CA204127NHLBI NIH HHS K99 HL150628NHLBI NIH HHS R01 HL120922NIAAA NIH HHS R21 AA030864NIAAA NIH HHS R21 AA030864-01A1NIDDK NIH HHS DK115144NIDDK NIH HHS F32 DK115144NIGMS NIH HHS R35 GM147513NIH HHS S10 OD026859NIH HHS S10OD026859
6 · The paper itself

Abstract

The Fanconi anemia (FA) DNA repair pathway is required for the repair of DNA interstrand cross-links (ICLs). ICLs are caused by genotoxins, such as chemotherapeutic agents or reactive aldehydes. Inappropriately repaired ICLs contribute to hematopoietic stem cell (HSC) failure and tumorigenesis. While endogenous acetaldehyde and formaldehyde are known to induce HSC failure and leukemia in FA patients, the effects of other toxic metabolites on FA pathogenesis have not been systematically investigated. Using a metabolism-focused CRISPR screen, we found a synthetically lethal interaction between ALDH9A1 and the deficiency of the FA pathway. Combined deficiency of ALDH9A1 and FANCD2 causes genomic instability, apoptosis, and decreased hematopoietic colony formation. Fanca-/-Aldh9a1-/- mice exhibited an increased incidence of ovarian tumors. A suppressor CRISPR screen revealed that the loss of ATP13A3, a polyamine transporter, resulted in improved survival of FANCD2-/-ALDH9A1-/- cells. These findings nominate high intracellular polyamines and the resulting 3-aminopropanal and acrolein as sources of endogenous DNA damage in patients with FA.

Indexed as

DNA DamageDNA RepairFanconi AnemiaFanconi Anemia Complementation Group A ProteinFanconi Anemia Complementation Group D2 ProteinAnimalsApoptosisFemaleGenomic InstabilityHematopoietic Stem CellsHumansMiceMice, KnockoutSignal TransductionFancd2 protein, mouseFanconi Anemia Complementation Group A ProteinFanconi Anemia Complementation Group D2 Protein

Identifiers

PMID40540243
PMCPMC12187107

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.