Evidence map›Paper›PMID 40539513›Full record

ArticleNucleic acids research2025

An engineered glutamic acid tRNA for efficient suppression of pathogenic nonsense mutations.

Caitlin Specht, Alejandro Tapia, Sarah Penrod, Gabriela A Soriano, Aya Awawdeh, Sarah A Alshawi, Cody A White, Jean-Denis Beaudoin, Emma H Doud, Oscar Vargas-Rodriguez and 2 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Mistranslating tRNA variants impact the proteome and phosphoproteome ofbioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Caitlin SpechtDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202, United States.
Alejandro TapiaDepartment of Microbiology and Immunology, Indiana University School of Medicine, Indianapolis, IN 46202, United States.
Sarah PenrodDepartment of Pediatrics, Indiana University School of Medicine, Indianapolis, IN 46202, United States.
Gabriela A SorianoDepartment of Molecular Biology and Biophysics, University of Connecticut School of Medicine, Farmington, CT 06030, United States.
Aya AwawdehDepartment of Molecular Biology and Biophysics, University of Connecticut School of Medicine, Farmington, CT 06030, United States.
Sarah A AlshawiDepartment of Genetics and Genome Sciences, University of Connecticut School of Medicine, Farmington, CT 06032, United States.
Cody A WhiteDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202, United States.
Jean-Denis BeaudoinDepartment of Genetics and Genome Sciences, University of Connecticut School of Medicine, Farmington, CT 06032, United States.
Emma H DoudDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202, United States.ORCID 0000-0003-0049-0073
Oscar Vargas-RodriguezDepartment of Molecular Biology and Biophysics, University of Connecticut School of Medicine, Farmington, CT 06030, United States.ORCID 0000-0002-2301-2800
Yunjie HuangDepartment of Pediatrics, Indiana University School of Medicine, Indianapolis, IN 46202, United States.
Jeffery M TharpDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202, United States.ORCID 0000-0002-2362-3249

Funding

Tumor Microenvironment and Metastasis ProgramP30CA082709 · NCI · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI David W Clapp · 1999 to 2026
$59.3M
Quality Assurance and Quality Control Project Management: Improving Submissions and Study Conduct in the Human Subjects Research Prior Approval ProcessUL1TR002529 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI MOE, SHARON M, WIEHE, SARAH ELIZABETH · 2018 to 2022
$27.2M
Regulatory roles of the epitranscriptome and RNA structurome during vertebrate developmentR35GM146883 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI Jean-Denis Beaudoin · 2022 to 2026
$2.1M
Catherine Peachy Foundation Breast Cancer BreakthroughClinical and Translational Sciences AwardCystic Fibrosis Foundation HUANG20F5Indiana Clinical and Translational Sciences Institute UL1TR002529Indiana University School of MedicineIndiana University School of Medicine Department of Biochemistry and Molecular BiologyIUSCCC Vera BradleyIU Simon Comprehensive Cancer Center P30CA082709NCATS NIH HHS UL1 TR002529NCI NIH HHS P30 CA082709NIGMS NIH HHS R35 GM146883NIH HHS R35GM146883Riley Children's FoundationUniversity of Connecticut
6 · The paper itself

Abstract

Nonsense mutations that introduce premature termination codons (PTCs) into protein-coding genes are responsible for numerous genetic diseases; however, there are currently no effective treatment options for individuals affected by these mutations. One approach to combat nonsense-related diseases relies on the use of engineered suppressor transfer RNAs (sup-tRNAs) that facilitate translational stop codon readthrough, thereby restoring full-length protein synthesis. While several sup-tRNAs have shown promising results in preclinical models, many exhibit low PTC suppression efficiency, precluding their use as therapeutics. For example, glutamic acid (Glu) codons represent one of the most common sites for nonsense mutations, yet existing sup-tRNAs are ineffective at suppressing Glu-to-Stop mutations. To address this limitation, here we describe a rationally designed sup-tRNA (tRNAGluV13) with greatly improved ability to suppress PTCs occurring at Glu codons. We demonstrate that tRNAGluV13 efficiently restores protein synthesis from multiple nonsense-containing reporter genes, faithfully installing Glu in response to PTCs. Additionally, we demonstrate that tRNAGluV13 can functionally rescue pathogenic PTCs that cause hereditary breast and ovarian cancer syndrome and cystic fibrosis. The ability of tRNAGluV13 to effectively suppress one of the most common PTC mutations should greatly expand the potential of sup-tRNA-based therapeutics.

Indexed as

Codon, NonsenseGlutamic AcidRNA, TransferBreast NeoplasmsCodon, TerminatorCystic FibrosisFemaleGenetic EngineeringHEK293 CellsHumansOvarian NeoplasmsProtein BiosynthesisCodon, NonsenseCodon, TerminatorGlutamic AcidRNA, Transfer

Identifiers

PMID40539513
PMCPMC12204705

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.