Evidence map›Paper›PMID 40537581›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2025

Self-organizing maps to aid prognostic and diagnostic biomarker identification in exploratory metabolomics of benign prostatic hyperplasia.

André Luiz Melo Camelo, André Matos de Oliveira, Hans Rolando Zamora-Obando, Aline Cristina Dias, Thaís de Assis Lopes, Regina Vincenzi Oliveira, João Pedro Simon Farah, Marina Franco Maggi Tavares, Alberto Azoubel Antunes, Ana Valéria Colnaghi Simionato

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Article in Metabolomics : Official journal of the Metabolomic Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

André Luiz Melo CameloLaboratory of Analysis of Biomolecules Tiselius, Department of Analytical Chemistry, Institute of Chemistry, Universidade Estadual de Campinas (UNICAMP), Campinas, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-3746-6472
André Matos de OliveiraDivision of Urology, School of Medicine, University of São Paulo, São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-7131-4328
Hans Rolando Zamora-ObandoLaboratory of Analysis of Biomolecules Tiselius, Department of Analytical Chemistry, Institute of Chemistry, Universidade Estadual de Campinas (UNICAMP), Campinas, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-4617-5773
Aline Cristina DiasLaboratory of Analysis of Biomolecules Tiselius, Department of Analytical Chemistry, Institute of Chemistry, Universidade Estadual de Campinas (UNICAMP), Campinas, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-2779-4635
Thaís de Assis LopesSEPARARE-Chromatography Research Center, Department of Chemistry, Federal University of São Carlos, São Carlos, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-4055-9952
Regina Vincenzi OliveiraSEPARARE-Chromatography Research Center, Department of Chemistry, Federal University of São Carlos, São Carlos, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-5061-5957
João Pedro Simon FarahDepartment of Fundamental Chemistry, Institute of Chemistry, University of Sao Paulo, Sao Paulo, Brazil.ORCID http://orcid.org/0000-0003-2607-8693
Marina Franco Maggi TavaresCenter for Multiplatform Metabolomics Studies (CEMM), Institute of Chemistry, University of São Paulo, São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-7395-3502
Alberto Azoubel AntunesDivision of Urology, School of Medicine, University of São Paulo, São Paulo, São Paulo, Brazil. antunesuro@uol.com.br.ORCID http://orcid.org/0000-0001-7520-8453
Ana Valéria Colnaghi SimionatoLaboratory of Analysis of Biomolecules Tiselius, Department of Analytical Chemistry, Institute of Chemistry, Universidade Estadual de Campinas (UNICAMP), Campinas, São Paulo, Brazil. avsimionato@unicamp.br.ORCID http://orcid.org/0000-0003-3899-2917

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 3304983/2022-5Coordenação de Aperfeiçoamento de Pessoal de Nível Superior 001Fundação de Amparo à Pesquisa do Estado de São Paulo 2014/50244-6; 2017/27059-6; 2020/16089-4; 2020/05965-8Universidad de Costa Rica OAICE-159-2019
6 · The paper itself

Abstract

introductionPopulation aging is increasing rapidly, representing a global trend that has launched many discussions regarding older adult's quality of life. Benign prostatic hyperplasia (BPH) is a commonly found condition among older men, affecting the lower urinary tract and quality of life. BPH diagnosis typically involves clinical evaluations which cannot accurately identify patients who will develop a clinically significant disease in the future. Metabolomics emerges as a promising approach to understand the metabolic pathways associated with BPH, offering potential aid in early diagnosis.

objectivesTo investigate the metabolic profile of BPH patients compared with a control group for diagnosing BPH at different stages.

methodA total of 62 individuals were selected and divided into two groups: 32 BPH (prostate volume > 40 mL) and 30 healthy individuals (prostate volume ≤ 40 mL and normal voiding patterns). Plasma samples were analyzed by LC-HRMS. Data were processed using unsupervised and supervised techniques. Self-organizing maps were further used to aid in the identification of potential biomarkers.

resultsSelf-organizing maps revealed three distinct groups which expanded upon the existing groups indicated by the medical team. Discriminant analysis models showed good predictive ability and accuracy, providing a classification perspective of patients and expanding diagnostic possibilities for different health states. Integration of chemical data with clinical variables revealed meaningful correlations. Our results also suggest the presence of discriminatory metabolites related to inflammation and oxidation processes, clarifying the metabolic basis of BPH.

conclusionSelf-organizing maps proved their effectiveness in classifying groups of samples from BPH patients, revealing potential biomarkers that went undetected by conventional data analysis methods. This approach underscores metabolomics as a relevant tool in identifying hidden patterns and supporting the development of more robust diagnostic and prognostic models.

Indexed as

BiomarkersMetabolomicsProstatic HyperplasiaAgedHumansMaleMetabolomeMiddle AgedPrognosisBiomarkersArtificial neural networksBenign prostatic hyperplasiaLC-HRMSMetabolomicsSelf-organizing maps

Identifiers

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.