Evidence map›Paper›PMID 40536874›Full record

ArticleCell reports2025

Systematic identification and characterization of eukaryotic and viral 2A peptide-bond-skipping sequences.

Deviyani M Rao, Emma R Horton, Chloe L Barrington, Chloe A Briney, Jesslyn C Henriksen, Federico Martinez-Seidel, Evan J Morrison, Erica M Sterling, Edgar D Provencio, Mia Harris and 3 more

Abstract read
In one paragraph

Article in Cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Molecular architecture and diversity of StopGo/2A translational recoding.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Deviyani M RaoDepartment of Biochemistry & Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA. Electronic address: deviyani.rao@cuanschutz.edu.
Emma R HortonDepartment of Biochemistry & Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA.
Chloe L BarringtonDepartment of Biochemistry & Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA.
Chloe A BrineyDepartment of Biochemistry & Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA.
Jesslyn C HenriksenDepartment of Biochemistry & Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA.
Federico Martinez-SeidelDepartment of Biochemistry & Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA.
Evan J MorrisonDepartment of Biochemistry & Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA.
Erica M SterlingDepartment of Biochemistry & Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA.
Edgar D ProvencioDepartment of Biochemistry & Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA.
Mia HarrisDepartment of Biochemistry & Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA.
Emily AllenDepartment of Biochemistry & Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA.
Jay R HesselberthDepartment of Biochemistry & Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA.
Olivia S RisslandDepartment of Biochemistry & Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA; RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, CO, USA. Electronic address: olivia.rissland@gmail.com.

Funding

Nanopore analysis of transfer RNA forms and functionsR35GM119550 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI Jay R Hesselberth · 2016 to 2026
$4.5M
Predoctoral Training Program in Molecular and Cellular Biology (Supplement: Mentoring in the Research Environment)T32GM136444 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI MICHAEL A MCMURRAY, Rytis Prekeris · 2020 to 2026
$3.7M
Exploring the connections between translation and mRNA decayR35GM128680 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI Olivia Selfridge Rissland · 2018 to 2026
$3.7M
Targeting Allosteric Studies to Modulate Protein Interactions and FunctionR01AI067423 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRAIK, CHARLES SCOTT · 2007 to 2009
$1.1M
Self-cleaving peptides: Mechanisms and Use in Diverse Eukaryotic SpeciesR21AI167423 · NIAID · UNIVERSITY OF COLORADO DENVER · PI RISSLAND, OLIVIA SELFRIDGE · 2023 to 2024
$422k
NIAID NIH HHS R01 AI067423NIAID NIH HHS R21 AI167423NIGMS NIH HHS R35 GM119550NIGMS NIH HHS R35 GM128680NIGMS NIH HHS T32 GM136444
6 · The paper itself

Abstract

2A peptides are 18- to 22-amino-acid sequences that cause an unusual co-translational peptide-bond-skipping event. Initially discovered in viruses, they allow multiple proteins to be produced from a single open reading frame. Despite their utility, their evolutionary prevalence and sequence diversity remain unclear. Our computational analyses predict ∼2,200 2A peptides, significantly expanding the known class of 2A peptides (class A) and identifying a previously unrecognized class (class B). Predicted 2A peptides are widespread in RNA viruses and eukaryotes. Functional tests in human cells confirm skipping activity in most cases, suggesting that thousands of active 2A peptides exist. Mutational analysis reveals key residues near the skipped bond and within the upstream region; for instance, class B 2A peptides contain a conserved N-terminal tryptophan, whose register and identity are critical for activity. Together, our findings reveal that 2A peptides are more diverse and widespread than previously appreciated.

Indexed as

PeptidesViral ProteinsAmino Acid SequenceHumansPeptidesViral Proteins2A peptideCP: Molecular biologyexit tunnelpeptide bond skippingribosometranslation

Identifiers

PMID40536874
PMCPMC12338488

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.