Evidence map›Paper›PMID 40535466›Full record

ArticleJournal of open source software2025

A MATLAB-based Instrument Control (MIC) package for fluorescence imaging.

Sajjad A Khan, Sandeep Pallikkuth, David J Schodt, Marjolein B M Meddens, Hanieh Mazloom-Farsibaf, Michael J Wester, Sheng Liu, Ellyse Taylor, Mohamadreza Fazel, Farzin Farzam and 1 more

Abstract read
In one paragraph

Article in Journal of open source software, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Sajjad A KhanDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.ORCID 0000-0002-6910-5199
Sandeep PallikkuthDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.ORCID 0009-0003-0400-6389
David J SchodtDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.ORCID 0000-0002-8986-2736
Marjolein B M MeddensDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.ORCID 0000-0002-9965-1342
Hanieh Mazloom-FarsibafDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.ORCID 0000-0002-2571-0418
Michael J WesterDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.ORCID 0000-0002-3520-7605
Sheng LiuDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.ORCID 0000-0003-1225-0763
Ellyse TaylorDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.ORCID 0009-0006-7269-2271
Mohamadreza FazelDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.ORCID 0000-0002-6215-1336
Farzin FarzamDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.ORCID 0000-0002-9939-1923
Keith A LidkeDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, New Mexico, USA.ORCID 0000-0002-9328-4318

Funding

WOMEN'S CANCERS RESEARCH PROGRAMP30CA118100 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Yolanda Sanchez · 2005 to 2026
$57.1M
UNM TRAININGP50GM085273 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI LIDKE, KEITH A · 2009 to 2018
$26.1M
FAIR Data Competency and Machine Learning Readiness for Biomedical ScientistsK12GM088021 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI REBECCA S. HARTLEY, Diane Lidke · 2009 to 2026
$16.4M
Imaging the Early Events in Membrane Receptor SignalingR35GM126934 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Diane Lidke · 2018 to 2026
$3.1M
Understanding how receptor tyrosine kinase activation dynamics specify proliferative cellular responsesR01CA248166 · NCI · YALE UNIVERSITY · PI LEMMON, MARK A, LIDKE, DIANE · 2020 to 2024
$2.6M
Adaptive Tracking and Quantum Imaging for Protein-Protein InteractionsR01GM140284 · NIGMS · UNIVERSITY OF NEW MEXICO · PI BECERRA CHAVEZ, FRANCISCO ELOHIM, LIDKE, KEITH A · 2022 to 2025
$1.8M
Structural and Functional Interactions within the Neuronal ER/PM JunctionR01GM109888 · NIGMS · COLORADO STATE UNIVERSITY · PI BEAM, KURT G, KRAFT, MARY L · 2014 to 2017
$1.5M
Reflected Beam Illumination Microscopy using a Microfluidics DeviceR21GM104691 · NIGMS · UNIVERSITY OF NEW MEXICO · PI LIDKE, KEITH A · 2012 to 2014
$598k
A hyperspectral microscope optimized for spectrally multiplexed live cell imagingR21RR024438 · NCRR · UNIVERSITY OF NEW MEXICO · PI LIDKE, KEITH A · 2009 to 2011
$520k
Measuring Protein-Protein Interactions using SPT-RESOLFTR21GM132716 · NIGMS · UNIVERSITY OF NEW MEXICO · PI LIDKE, KEITH A · 2019 to 2020
$393k
Multi-target super-resolution imaging using sequential labelingR21EB019589 · NIBIB · UNIVERSITY OF NEW MEXICO · PI LIDKE, KEITH A · 2015 to 2016
$390k
NCI NIH HHS P30 CA118100NCI NIH HHS R01 CA248166NCRR NIH HHS R21 RR024438NIBIB NIH HHS R21 EB019589NIGMS NIH HHS K12 GM088021NIGMS NIH HHS P50 GM085273NIGMS NIH HHS R01 GM109888NIGMS NIH HHS R01 GM140284NIGMS NIH HHS R21 GM104691NIGMS NIH HHS R21 GM132716NIGMS NIH HHS R35 GM126934
6 · The paper itself

Abstract

MATLAB Instrument Control (MIC) is a software package designed to facilitate data collection for custom-built microscopes. Utilizing object-oriented programming, MIC provides a class for each low-level instrument. These classes inherit from a common MIC abstract class, ensuring a uniform interface across different instruments. Key components such as lasers, stages, power meter and cameras are grouped under abstract subclasses, which standardize interfaces and simplify the development of control classes for new instruments. Both simple and complex systems can be built from these lower level tools. Since the interoperation is developed by the end user, the modes or sequence of operations can be flexibly designed with interactive or automated data collection and integrated analysis. MATLAB provides the ability to create GUIs and therefore MIC allows for both rapid prototyping and for building custom, high-level user interfaces that can be used for production instruments.

Identifiers

PMID40535466
PMCPMC12176407

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.