Evidence map›Paper›PMID 40534397›Full record

ArticleThe New phytologist2025

COmapper: high-resolution mapping of meiotic crossovers by long-read sequencing in Arabidopsis.

Dohwan Byun, Namil Son, Heejin Kim, Jaeil Kim, Jihye Park, Sang-Jun Park, Hyein Kim, Jaebeom Kim, Juhyun Kim, Seula Lee and 4 more

Abstract read
In one paragraph

Article in The New phytologist, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Dohwan Byun *Department of Life Sciences, Pohang University of Science and Technology, Pohang, 37673, Korea.ORCID https://orcid.org/0000-0002-1980-2252
Namil Son *Department of Life Sciences, Pohang University of Science and Technology, Pohang, 37673, Korea.ORCID https://orcid.org/0000-0003-4352-5627
Heejin KimDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, 37673, Korea.ORCID https://orcid.org/0000-0002-6144-775X
Jaeil KimDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, 37673, Korea.ORCID https://orcid.org/0000-0001-8322-5624
Jihye ParkDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, 37673, Korea.ORCID https://orcid.org/0000-0002-9619-6575
Sang-Jun ParkDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, 37673, Korea.ORCID https://orcid.org/0009-0005-9799-6821
Hyein KimDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, 37673, Korea.ORCID https://orcid.org/0009-0006-9903-6530
Jaebeom KimDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, 37673, Korea.ORCID https://orcid.org/0009-0000-9961-8836
Juhyun KimDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, 37673, Korea.ORCID https://orcid.org/0000-0001-5462-3391
Seula LeeSchool of Biological Sciences, Seoul National University, Seoul, 08826, Korea.ORCID https://orcid.org/0009-0005-1822-2466
Youbong HyunSchool of Biological Sciences, Seoul National University, Seoul, 08826, Korea.ORCID https://orcid.org/0000-0002-9421-7061
Piotr A ZiolkowskiLaboratory of Genome Biology, Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Poznań, 61-614, Poland.ORCID https://orcid.org/0000-0001-7673-6565
Ian R HendersonDepartment of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, UK.ORCID https://orcid.org/0000-0001-5066-1489
Kyuha ChoiDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, 37673, Korea.ORCID https://orcid.org/0000-0002-4072-3807

Funding

National Research Foundation of Korea RS-2024-00335818National Research Foundation of Korea RS-2024-00407469Samsung Science and Technology Foundation SSTF-BA2202-09
6 · The paper itself

Abstract

Meiotic crossovers rearrange existing genetic variation between homologous chromosomes, profoundly affecting genomic diversity. Crossovers are typically constrained to one to three events per chromosome pair, and their distribution is shaped by chromatin accessibility and DNA polymorphisms. Genome-wide crossover maps can be generated in plants by high-throughput short-read sequencing or linked-read sequencing. Here, we use long-read nanopore sequencing technology to develop a crossover mapping pipeline, COmapper, for high-resolution mapping of genome-wide crossovers from pooled DNA of F

Indexed as

ArabidopsisChromosome MappingCrossing Over, GeneticHigh-Throughput Nucleotide SequencingMeiosisSequence Analysis, DNAGenome, PlantPollenArabidopsis thalianacrossoverlong‐read sequencingmeiosispolymorphismRECQ4

Identifiers

PMID40534397
PMCPMC12267935

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.