ArticleGenome biology2025
k-mer-based GWAS in a wheat collection reveals novel and diverse sources of powdery mildew resistance.
Article in Genome biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- Integrating deep learning and pangenomics to recover missing heritability from wild structural variations.BMC genomics · 2026Review
- BiTUGA: scalable prevalence-based unitig association testing for binary traits.G3 (Bethesda, Md.) · 2026Article
- A k-mer-based genome-wide association study approach empowering gene mining in polyploids.Nature genetics · 2026Article
- k-mer-based approaches to unlock genebank genomics for targeted crop improvement.Nature genetics · 2026Review
- Multi-locus genome-wide association study on the rheological traits in wheat flour dough.BMC genomics · 2026Article
- Article
- Fine mapping of a powdery mildew resistance gene PmCWI16926 from cultivated emmer wheat.Communications biology · 2026Article
- Pan-NLRome ofFrontiers in plant science · 2026Article
- Breeding jassid-resistant okra (Frontiers in plant science · 2026Review
- Genetic resource optimization: a core collection of tetraploid wheat from 2,254 NBRP-wheat accessions.BMC plant biology · 2025Article
- Whole Genome Development of Specific Alien-Chromosome Oligo (SAO) Markers for Wild Peanut Chromosomes Based on Chorus2.Plants (Basel, Switzerland) · 2025Article
- Genetic Basis Identification of aPlants (Basel, Switzerland) · 2025Article
- A high-throughput pipeline for phenotyping, object detection and quantification of leaf trichomes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- CRISPR activation: identifying and using novel genes for plant disease resistance breeding.Frontiers in genome editing · 2025Review
Corrections and comments
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Authors and funding
20 authors.
Funding
Abstract
Wheat genetic resources hold the diversity required to mitigate agricultural challenges from climate change and reduced inputs. Using DArTseq, we genotype 461 wheat landraces and cultivars and evaluate them for powdery mildew resistance. By developing a k-mer-based GWAS approach with fully assembled genomes of Triticum aestivum and its progenitors, we uncover 25% more resistance-associated k-mers than single-reference methods, outperforming SNP-based GWAS in both loci detection and mapping precision. In total, we detect 34 powdery mildew resistance loci, including 27 potentially novel regions. Our approach underscores the importance of integrating multiple reference genomes to unlock the potential of wheat germplasm.
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Registered trials
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