Evidence map›Paper›PMID 40533170›Full record

ArticleMicrobes and environments2025

Metagenomic Insights into Candidatus Scalindua in a Long-term Cultivated Marine Anammox Consortium: The Important Role of Tetrahydrofolate-mediated Carbon Fixation.

Thelwadanage Nadisha Tharangani Kumari Nawarathna, Naoki Fujii, Kohei Yamamoto, Kyohei Kuroda, Takashi Narihiro, Noriatsu Ozaki, Akiyoshi Ohashi, Tomonori Kindaichi

Abstract read
In one paragraph

Article in Microbes and environments, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Thelwadanage Nadisha Tharangani Kumari NawarathnaDepartment of Civil and Environmental Engineering, Graduate School of Advanced Science and Engineering, Hiroshima University.
Naoki FujiiDepartment of Civil and Environmental Engineering, Graduate School of Advanced Science and Engineering, Hiroshima University.
Kohei YamamotoDepartment of Civil and Environmental Engineering, Graduate School of Advanced Science and Engineering, Hiroshima University.
Kyohei KurodaBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST).
Takashi NarihiroBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST).
Noriatsu OzakiDepartment of Civil and Environmental Engineering, Graduate School of Advanced Science and Engineering, Hiroshima University.
Akiyoshi OhashiDepartment of Civil and Environmental Engineering, Graduate School of Advanced Science and Engineering, Hiroshima University.
Tomonori KindaichiDepartment of Civil and Environmental Engineering, Graduate School of Advanced Science and Engineering, Hiroshima University.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Marine anammox bacteria have been an exciting research area in recent years due to their high effectiveness in treating ammonia-containing saline wastewater. However, their direct implementation in the wastewater industry faces challenges due to slow growth, difficulty obtaining pure cultures, and their tendency to exist as part of an anammox consortium, interacting symbiotically with other bacteria. In the present study, 91 draft genome metagenome-assembled genomes (MAGs) from a long-term-operated reactor were recovered to clarify detailed symbiotic interactions within an anammox consortium. One marine anammox bacterial MAG, identified as Candidatus Scalindua, was successfully recovered and was abundant within the sampled microbial community. A comprehensive metabolic pathway ana-lysis revealed that Ca. Scalindua exhibited the complete anammox pathway and the Wood-Ljungdahl pathway for carbon fixation. The folate biosynthesis pathway in Ca. Scalindua was incomplete, lacking dihydrofolate reductase, a key enzyme for tetrahydrofolate (THF) production. The folate biopterin transporter, essential for transporting folate-related metabolites among coexisting bacteria, was identified exclusively in Ca. Scalindua. In addition, the impact of exogenously supplied THF on microbial activity and carbon uptake rates was investigated in batch experiments using

Indexed as

AmmoniaBacteriaCarbon CycleMicrobial ConsortiaSeawaterBioreactorsCarbonFolic AcidGenome, BacterialMetabolic Networks and PathwaysMetagenomeMetagenomicsPhylogenyWastewaterAmmoniaCarbonFolic AcidWastewateranammoxCandidatus Scalinduafolate biopterin transporter (FBT)tetrahydrofolate (THF)Wood–Ljungdahl pathway

Identifiers

PMID40533170
PMCPMC12213060

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.