Evidence map›Paper›PMID 40532660›Full record

ArticleCell reports. Medicine2025

The human neural cell atlas of Zika virus infection in developing brain tissue.

Caleb Stokes, Leanne S Whitmore, Dante Moreno, Karan Malhotra, Jennifer Tisoncik-Go, Emily Tran, Nick Wren, Ian A Glass, Birth Defects Research Laboratory (BDRL), Jessica E Young and 1 more

Abstract read
In one paragraph

Article in Cell reports. Medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Caleb StokesDepartment of Pediatrics, University of Washington, Seattle, WA, USA; Seattle Children's Hospital, Seattle, WA, USA; Center for Innate Immunity and Immune Disease, Department of Immunology, University of Washington, Seattle, WA, USA. Electronic address: castokes@uw.edu.
Leanne S WhitmoreCenter for Innate Immunity and Immune Disease, Department of Immunology, University of Washington, Seattle, WA, USA.
Dante MorenoCenter for Innate Immunity and Immune Disease, Department of Immunology, University of Washington, Seattle, WA, USA.
Karan MalhotraUniversity of California, Berkeley, Berkeley, CA, USA.
Jennifer Tisoncik-GoCenter for Innate Immunity and Immune Disease, Department of Immunology, University of Washington, Seattle, WA, USA; Washington National Primate Research Center, University of Washington, Seattle, WA, USA.
Emily TranCenter for Innate Immunity and Immune Disease, Department of Immunology, University of Washington, Seattle, WA, USA.
Nick WrenSchool of Medicine, University of Washington, Seattle, WA, USA.
Ian A GlassDepartment of Pediatrics, University of Washington, Seattle, WA, USA; Seattle Children's Hospital, Seattle, WA, USA.
Birth Defects Research Laboratory (BDRL)Department of Pediatrics, University of Washington, Seattle, WA, USA.
Jessica E YoungInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Michael GaleCenter for Innate Immunity and Immune Disease, Department of Immunology, University of Washington, Seattle, WA, USA; Washington National Primate Research Center, University of Washington, Seattle, WA, USA; Department of Microbiology and Immunology, University of Minnesota, Minneapolis, MN, USA; Institute on Infectious Diseases, University of Minnesota, Minneapolis, MN, USA. Electronic address: mgale@umn.edu.

Funding

Washington National Primate Research CenterP51OD010425 · OD · UNIVERSITY OF WASHINGTON · PI Mari Ostendorf · 2012 to 2026
$201.8M
LABORATORY OF DEVELOPMENTAL BIOLOGYR24HD000836 · NICHD · UNIVERSITY OF WASHINGTON · PI Ian Amos Glass · 1995 to 2026
$16.9M
JAK-STAT Control of Zika Virus-Induced Fetal InjuryR01AI143265 · NIAID · UNIVERSITY OF WASHINGTON · PI ADAMS WALDORF, KRISTINA M., GALE, MICHAEL · 2019 to 2023
$4.6M
Innate Immune Regulation of Zika Virus InfectionR01AI145296 · NIAID · UNIVERSITY OF WASHINGTON · PI COYNE, CAROLYN B, DIAMOND, MICHAEL S · 2019 to 2023
$4.1M
Innate Immunity to West Nile VirusR01AI179722 · NIAID · UNIVERSITY OF WASHINGTON · PI Michael Gale, Andrew Atwell Oberst · 2024 to 2026
$2.6M
Characterization of AD-related endolysosomal dysfunction in human neural cellsR01AG080585 · NIA · UNIVERSITY OF WASHINGTON · PI SUMAN JAYADEV, Jessica E Young · 2024 to 2026
$2.5M
Innate Immune Mechanisms Controlling Flavivirus NeurovirulenceR01AI183793 · NIAID · UNIVERSITY OF MINNESOTA · PI Michael Gale, Andrew Atwell Oberst · 2024 to 2026
$2.4M
Innate Immunity of Zika Virus Infection In Human Neural ProgenitorsK08AI150996 · NIAID · UNIVERSITY OF WASHINGTON · PI STOKES, CALEB · 2020 to 2024
$975k
Role of HDAC2 as a modulator of aging and Alzheimer's disease phenotypes in stem-cell derived neuronsK01AG059841 · NIA · UNIVERSITY OF WASHINGTON · PI YOUNG, JESSICA ELAINE · 2019 to 2023
$612k
NIAID NIH HHS K08 AI150996NIAID NIH HHS R01 AI143265NIAID NIH HHS R01 AI145296NIAID NIH HHS R01 AI179722NIAID NIH HHS R01 AI183793NIA NIH HHS K01 AG059841NIA NIH HHS R01 AG080585NICHD NIH HHS R24 HD000836NIH HHS P51 OD010425
6 · The paper itself

Abstract

Zika virus (ZIKV) infection during pregnancy can lead to fetal brain infection and developmental anomalies collectively known as congenital Zika syndrome (CZS). To define the molecular features underlying CZS in a relevant human cell model, we evaluate ZIKV infection in primary human fetal brain explants and human induced pluripotent stem cell-derived mixed neural cultures at single-cell resolution. We identify astrocytes as important innate immune sentinel cells detecting ZIKV and producing interferon-beta (IFN-β). In contrast, neural stem cells display impaired innate immunity and support high levels of viral replication. ZIKV infection of neurons suppresses differentiation and synaptic signaling gene networks and programs a molecular switch from neurogenesis to astrogliogenesis. We identify a universal ZIKV-driven cellular stress response linked to intrinsic apoptosis and regulated by IFN-β. These findings reveal innate immune signaling intersecting with ZIKV-driven perturbations in cellular function to influence CZS outcomes including neuron developmental dysfunction and apoptotic cell death.

Indexed as

BrainNeuronsZika VirusZika Virus InfectionApoptosisAstrocytesCell DifferentiationFemaleHumansImmunity, InnateInduced Pluripotent Stem CellsInterferon-betaNeural Stem CellsNeurogenesisPregnancySignal TransductionInterferon-betacongenital infectioncongenital Zika syndromefetal immunologyinnate immunityneural stem cellsneurodevelopmentneuro-immunologyneurovirologysingle-cell RNA sequencingZika virus

Identifiers

PMID40532660
PMCPMC12208335

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.