Evidence map›Paper›PMID 40530699›Full record

ArticleNucleic acids research2025

Non-coding Y RNA fragments in a complex with YBX1 modulate PARP1 residency at DNA double strand breaks.

Annabelle Shaw, Kamal Ajit, Manon Chataignier, Monika Gullerova

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Annabelle ShawSir William Dunn School of Pathology, University of Oxford, South Parks Road, OxfordOX1 3RE, United Kingdom.
Kamal AjitSir William Dunn School of Pathology, University of Oxford, South Parks Road, OxfordOX1 3RE, United Kingdom.
Manon ChataignierSir William Dunn School of Pathology, University of Oxford, South Parks Road, OxfordOX1 3RE, United Kingdom.
Monika GullerovaSir William Dunn School of Pathology, University of Oxford, South Parks Road, OxfordOX1 3RE, United Kingdom.ORCID 0000-0002-4512-2779

Funding

Cancer Research UK BVR01170EPA Trust Fund BVR01670Lee Placito TrustUniversity of Oxford
6 · The paper itself

Abstract

To protect genome integrity from pervasive threats of damage and prevent diseases like cancer, cells employ an integrated network of signalling pathways called the DNA damage response. These pathways involve both protein and RNA components, which can act within the damaged cell or be transferred intercellularly to influence population-wide responses to damage. Here, we show that radioprotection can be conferred by damage-derived exosomes and is dependent on YBX1-packaged Y3-derived ysRNA. In recipient cells, ysRNAs are methylated on cytosine and bound by m5C reader, YBX1. YBX1/ysRNA localise at double strand break (DSB) sites to promote efficient DNA repair and cell survival through complex formation with PARP1. YBX1 modulates PARP1 auto-modification by facilitating ysRNA ADP-ribosylation, promoting increased PARP1 residency at DSBs. Our data highlight an unprecedented role for these under-studied species of small non-coding RNAs, identifying them as a novel substrate for PARP1 mediated ADP-ribosylation with a function in DNA repair.

Indexed as

DNA Breaks, Double-StrandedPoly (ADP-Ribose) Polymerase-1Y-Box-Binding Protein 1ADP-RibosylationDNA RepairHumansPARP1 protein, humanPoly (ADP-Ribose) Polymerase-1Y-Box-Binding Protein 1YBX1 protein, human

Identifiers

PMID40530699
PMCPMC12203914

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.