Evidence map›Paper›PMID 40530695›Full record

ArticleNucleic acids research2025

Selective inhibition of Mycobacterium tuberculosis GpsI unveils a novel strategy to target the RNA metabolism.

Tizian Griesser, Rui Wang, Irene Pachon Angona, Janis Rogenmoser, Julia Obrist, Gisbert Schneider, Peter Sander

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tizian GriesserInstitute of Medical Microbiology, University of Zurich, 8006 Zurich, Switzerland.ORCID 0009-0002-8297-461X
Rui WangInstitute of Medical Microbiology, University of Zurich, 8006 Zurich, Switzerland.ORCID 0009-0004-2045-5368
Irene Pachon AngonaDepartment of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, ETH Zürich, 8093 Zürich, Switzerland.ORCID 0000-0002-3212-9111
Janis RogenmoserInstitute of Medical Microbiology, University of Zurich, 8006 Zurich, Switzerland.ORCID 0009-0009-6586-8664
Julia ObristInstitute of Medical Microbiology, University of Zurich, 8006 Zurich, Switzerland.ORCID 0009-0006-2612-9285
Gisbert SchneiderDepartment of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, ETH Zürich, 8093 Zürich, Switzerland.ORCID 0000-0001-6706-1084
Peter SanderInstitute of Medical Microbiology, University of Zurich, 8006 Zurich, Switzerland.ORCID 0000-0003-1581-0682

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
Federal Office of Public Health 3632001500JPIAMR 2022_050NIGMS NIH HHS P41 GM103311NIGMS NIH HHS R01 GM129325Swiss National Science FoundationSwiss National Science Foundation 310030_197699/1
6 · The paper itself

Abstract

Polyribonucleotide nucleotidyl-transferases (PNPases) play a critical role in the degradation of mRNA. The mycobacterial PNPase, guanosine penta-phosphate synthase I (GpsI), is an essential enzyme in Mycobacterium tuberculosis (Mtb), collaborating with endoribonucleases and helicases to process RNA. In this study, we identify GpsI as a novel and underexplored drug target. The inhibitor 1-(4'-(2-phenyl-5-(trifluoromethyl) oxazole-4-carboxamido)-[1,1'-biphenyl]-4-caroxamido) cyclopentane-1-carboxylic acid (X1), discovered through a whole-cell screening, specifically inhibits GpsI activity in biochemical assays. Biochemical and physiological analyses of engineered GpsI variants and recombinant Mycobacterium smegmatis pinpoint amino acids 328 and 527 as critical residues for the selective activity of X1 against Mtb complex. High-resolution cryo-electron microscopy analysis of the ternary GpsI-X1-poly(A) complex elucidates the drug-binding pocket, providing insight into its mechanism of action. This study introduces a potent inhibitor targeting the underexplored Mtb-GpsI and offers a molecular explanation for its selective specificity.

Indexed as

Antitubercular AgentsBacterial ProteinsEnzyme InhibitorsMycobacterium tuberculosisRNABinding SitesCryoelectron MicroscopyModels, MolecularMycobacterium smegmatisAntitubercular AgentsBacterial ProteinsEnzyme InhibitorsRNA

Identifiers

PMID40530695
PMCPMC12203904

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.