Evidence map›Paper›PMID 40530688›Full record

ArticleNucleic acids research2025

Landscape of A-I RNA editing in mouse, pig, macaque, and human brains.

Conghui Li, Wei Lv, Zhiwei He, Xiaoguang Pan, Yuchen Zeng, Jan Mulder, Evelina Sjöstedt, Zhiwei Huang, Wei Liu, Liangzhi Xu and 5 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Multi-Tissue Genetic Regulation of RNA Editing in Pigs.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Conghui LiDepartment of Biology, University of Copenhagen, Copenhagen 2100, Denmark.
Wei LvHangzhou Institute of Medicine (HIM), Chinese Academy of Sciences, Hangzhou, Zhejiang 310000, China.
Zhiwei HeBGI-Shenzhen, Shenzhen 518083, China.
Xiaoguang PanDepartment of Biology, University of Copenhagen, Copenhagen 2100, Denmark.
Yuchen ZengHangzhou Institute of Medicine (HIM), Chinese Academy of Sciences, Hangzhou, Zhejiang 310000, China.
Jan MulderDepartment of Neuroscience, Karolinska Institutet, 171 77 Stockholm, Sweden.
Evelina SjöstedtDepartment of Neuroscience, Karolinska Institutet, 171 77 Stockholm, Sweden.
Zhiwei HuangHuazhen Biosciences, Guangzhou 510900, China.
Wei LiuHuazhen Biosciences, Guangzhou 510900, China.
Liangzhi XuHuazhen Biosciences, Guangzhou 510900, China.
Eli EisenbergRaymond and Beverly Sackler School of Physics and Astronomy and Sagol School of Neuroscience, Tel Aviv University, Tel Aviv 6997801, Israel.ORCID 0000-0001-8681-3202
Lin LinDanish Research Institute of Translational Neuroscience (DANDRITE), Department of Biomedicine, Aarhus University, Aarhus C 8000, Denmark.
Jacob B HansenDepartment of Biology, University of Copenhagen, Copenhagen 2100, Denmark.
Jinrong HuangBGI-Shenzhen, Shenzhen 518083, China.ORCID 0000-0001-8085-9939
Yonglun LuoDanish Research Institute of Translational Neuroscience (DANDRITE), Department of Biomedicine, Aarhus University, Aarhus C 8000, Denmark.ORCID 0000-0002-0007-7759

Funding

Breakthrough T1DCOCIREFPIAEuropaBioEuropean Union's HorizonInnovative Health Initiative 101165643Lundbeck Foundation R396-2022-350MedTech EuropeNovo Nordisk Foundation NNF21OC0068988Novo Nordisk Foundation NNF21OC0072031Vaccines EuropeVeriSIM Life
6 · The paper itself

Abstract

Adenosine-to-inosine (A-I) RNA editing is one of the most abundant post-transcriptional RNA modification processes. However, the roles of A-I RNA editing in the evolution and functions of primate brains are underexplored. Here, we perform whole-genome and whole-transcriptome sequencing of 39 anatomically defined brain regions of adult Macaca fascicularis and identify 2 782 079 A-I editing sites, including 2009 recoding sites enriched in genes related to neurotransmission functions. Most of macaque brain A-I editing sites are detected in the cerebral cortex, cerebellum, and amygdala. The brain A-I editing activity is associated with the estimated proportion of neurons to some extent. Comparison of A-I editing in mouse, pig, macaque, and human brains reveals that primates exhibit higher editing levels, specifically enriched in genes encoding neurotransmitter receptors. We identify 478 598 conserved brain editing sites between human and macaque brains, mostly found in the cerebral cortex and enriched in genes related to the cytoskeletal system and ubiquitin-dependent protein degradation pathway. Our study sheds light on the importance of post-transcriptional A-I RNA editing in the evolution and function of nervous systems.

Indexed as

AdenosineBrainInosineRNA EditingAnimalsHumansMacaca fascicularisMiceSwineTranscriptomeAdenosineInosine

Identifiers

PMID40530688
PMCPMC12203800

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.