Evidence map›Paper›PMID 40528310›Full record

ArticleACS biomaterials science & engineering2025

Scaffolding Light-Up Aptamers on DNA Nanostructures for Fluorescence Enhancement.

Luyao Shen, Donglei Yang, Daniel Fu, Pengfei Wang, Yonggang Ke

Abstract read
In one paragraph

Article in ACS biomaterials science & engineering, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Luyao ShenWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia 30322, United States.ORCID 0000-0002-3231-4878
Donglei YangInstitute of Molecular Medicine, Department of Laboratory Medicine, Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China.
Daniel FuWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia 30322, United States.
Pengfei WangInstitute of Molecular Medicine, Department of Laboratory Medicine, Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China.ORCID 0000-0002-3125-763X
Yonggang KeWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia 30322, United States.ORCID 0000-0003-1673-2153

Funding

Equipment Supplement: Cell sorting flow cytometry to support the BTDDRM1GM145394 · NIGMS · EMORY UNIVERSITY · PI Khalid S. Salaita · 2023 to 2026
$5.6M
Integrating low-cost and versatile technologies to achieve colorimetric HCV and HIV detection from whole bloodR01AI180093 · NIAID · EMORY UNIVERSITY · PI Matthew Collins, David Richard Myers · 2024 to 2026
$2.1M
DNA nanodevices for molecular interrogation and regulation of lymphocytes in adaptive immune systemR35GM153472 · NIGMS · EMORY UNIVERSITY · PI Yonggang Ke · 2024 to 2026
$1.4M
NIAID NIH HHS R01 AI180093NIGMS NIH HHS R35 GM153472NIGMS NIH HHS RM1 GM145394
6 · The paper itself

Abstract

RNA-based fluorescent light-up aptamers (FLAPs) have been progressively developed as imaging probes because of their high signal-to-noise ratio. However, it remains a challenge to use these light-up aptamers due to their poor folding and stability. Leveraging DNA nanotechnology, we investigated whether a DNA origami template could improve folding and further enhance the functionality of FLAPs, namely, the corresponding fluorescence intensities. We utilized aptamer Broccoli and its cognate fluorogen DFHBI-1T as a model. When singular aptamer Broccoli was scaffolded on DNA origami, DNA brick-based nanostructures, DNA double helices, and even on structures as simple as a DNA hairpin stem, our results showed that the fluorescence intensities could be significantly enhanced. These findings show a positive correlation between the fluorogen activity of light-up aptamers and the DNA stem length, potentially mediated by the improved structural stability of the DNA stem, as determined by their simulated thermodynamic properties. Our studies provide a new method to design and enhance the fluorescence behavior of FLAPs, especially structures with a G-quadruplex-based fluorogen recognition region.

Indexed as

Aptamers, NucleotideDNAFluorescent DyesNanostructuresFluorescenceG-QuadruplexesNucleic Acid ConformationAptamers, NucleotideDNAFluorescent Dyesaptamer functionality enhancementDNA nanotechnologyRNA-based fluorescent light-up aptamers

Identifiers

PMID40528310
PMCPMC12264856

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.